Aanc022777.1
Basic Information
- Insect
- Apamea anceps
- Gene Symbol
- -
- Assembly
- GCA_951799955.1
- Location
- OX637521.1:5624147-5630875[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.036 3.1 9.3 0.1 5 23 313 331 312 331 0.96 2 12 0.009 0.76 11.2 0.3 3 23 339 359 337 359 0.94 3 12 1.1 94 4.6 0.3 2 23 367 388 366 388 0.91 4 12 3e-07 2.5e-05 25.3 1.0 2 23 394 415 394 415 0.98 5 12 0.003 0.26 12.7 4.3 1 23 421 443 421 443 0.98 6 12 0.00049 0.041 15.2 0.3 1 20 447 466 447 468 0.94 7 12 6.7e-05 0.0057 17.9 0.2 1 23 501 524 501 524 0.96 8 12 0.00093 0.078 14.3 0.1 3 23 533 553 532 553 0.99 9 12 3e-05 0.0025 19.0 0.4 1 23 564 586 564 586 0.98 10 12 8e-05 0.0067 17.6 4.5 1 23 592 614 592 614 0.98 11 12 0.003 0.25 12.7 0.3 3 23 622 642 620 642 0.98 12 12 6.4e-06 0.00054 21.1 0.7 1 23 648 671 648 671 0.96
Sequence Information
- Coding Sequence
- ATGTGGTTTTTCAAATTGGTGGTCAAGGAAGACGATGGTCTACCGCAGAAGCTGTGCACAGATTGTTATGCTATCATGAACTCCGCGTACCAATTCCGAAAACAGTGCATCAAAATGGACAGTGAACTTCGTCTACAACTCAACACTGTACTAGATATATCTAAAAGTAATAATCTCTCCAAATATGATGACGACGATATCGGGAACGATCCCATGAAACAACTTGAGGCTATCATCAAACAAGAGCCAACTGATAGCGACGATGACTACTACTACGTCCTGGTTATTGATGACCCTAAAGATAAGGATAAGGAAGAAACAACAGAAGTGACGAACATTAAAGAAGAAGAATATGAAGATATTGTGGCCAATGCGGAGACTACAACCACTTACACACAAGAACCAACTCAAAGCTCTCAGAGTCAGTTTGAAGACTCCATTGAATCATTTCTCATGTCCAACACCAAAGTCTCCGCTAACGTGCCAGCTACTATACTAGAGAATGAGGAAGAGAGCCAGGAAACTGACGATTTGGCCATGAACATAGATGAAACCCAGGATAGTATGTCTCATGAACAAAATTTTGCTGAAATGGAAGAGTCACAAGAAGATGAAGCCATTGAAACAATTACTTCTAGTGTTATCAATGAGCTGCCTAGTTCGAAAAACTTCATCAAAATATTGACCACAACTGACTCTGATGGCACTATACTGTTGAAAGGTAACGACAGAATCCAATACCTGACTGATTCTCAACTAGTCGCAAACGAAGATGAAGACGGAGACGCATTGTCCCAAGAAGTGATATTCTGTGAAGGTGATGACTCTTCCCAATTCCAAATCCTGAAATATGATGGTTCAGAATTGGTTATAGAATACGCAGATGATAGCCAAATAGCTACGGTACTACAACAAGAGGATGGGACATTCTTATGTGATTGTGGAGAGCAGTTCGAAGACTTGGCCGATTATGAGAAGCATCAGTACAAACACAATCCTGCTGGGGAACATTTGTGTAACTTATGCGGTAAAGGCTTTGAGTCCTCAGAAATTCTTACTGGACACATGCTACTTCATAGCAGTACCGGACTCTTAATCACTTGTCCGTTCTGCAATCAGCTTATCAGACGCAATGCATTGACGCAGCACATCAAATATGGTCACAACAATATCAAACCTCGCTGCAATATTTGTTTCAAGACATTTGCCAATCCGAACAACTTGAAACGTCACATGATGATTCACAGCGGTATCAGAGAGTTTGAATGTGACATCTGTTTTAAGAGATTCCACCAGAAAATCACAATGCAAACACACAGGTTAACGCATATGAACCCATTTTCATGCAACCAGTGCGAACAATCATTTGAGAATAAGGCTGCATTGACCAATCACAAAGAATCTGACGACTGCTCAAAATCTAAAGTGATCAAGGTCAAAGAAGAATTAATGAAGACTGTCAAGCAAGAAATTACTACGAATCTTGGTAAACTGCTTGGTTATGCTTGCTCGCTATGCAAGAAGATGTTTTCTGTGGAGTCTGCATTAGAGCAACATATTGAAAGCACACACATTGTTGATCCAACAGAATTGTTATGTTCTGAGTGCGGTGAAGTACTACCGTCTAAGAAAGACATGCAAACTCACATACTGACTCACAAGAATATGAAAGTGAAGAACGTAAAACGGTTTGAATGCAGTATTTGTGGGAAAGGGTGTTCAAGCCAAGCTATGCTTTTGATGCATGAGCGAGTACATACAAATGAGAGGCCCTTCCCATGCCAACTATGTTCTTTACGGTTTAAAACGAAAACACATTTACGGACGCATCAGCTTACTCACACACGGGAAAAGAAGTTTGGATGCTCAGTTTGTATGAAGTTCTTTGCCCTCAAAGGAAATTTGGTTGTTCATCTTCGAACACATACAGGAGAGCGCCCATATGTATGTTCGATATGCGGAGAAGCTTTCATAGACTCGAAATATTTGAAGAAACACAAACTAAAGAAACATTCTATAGATAATGTGCCGTGGAATCAATATTGA
- Protein Sequence
- MWFFKLVVKEDDGLPQKLCTDCYAIMNSAYQFRKQCIKMDSELRLQLNTVLDISKSNNLSKYDDDDIGNDPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKDKDKEETTEVTNIKEEEYEDIVANAETTTTYTQEPTQSSQSQFEDSIESFLMSNTKVSANVPATILENEEESQETDDLAMNIDETQDSMSHEQNFAEMEESQEDEAIETITSSVINELPSSKNFIKILTTTDSDGTILLKGNDRIQYLTDSQLVANEDEDGDALSQEVIFCEGDDSSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCNLCGKGFESSEILTGHMLLHSSTGLLITCPFCNQLIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFSCNQCEQSFENKAALTNHKESDDCSKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHIESTHIVDPTELLCSECGEVLPSKKDMQTHILTHKNMKVKNVKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHSIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039097;
- 90% Identity
- iTF_00037092;
- 80% Identity
- -