Aanc028914.1
Basic Information
- Insect
- Apamea anceps
- Gene Symbol
- -
- Assembly
- GCA_951799955.1
- Location
- OX637530.1:4420481-4438888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.51 43 5.7 0.7 1 23 234 256 234 256 0.94 2 32 0.0061 0.52 11.7 0.4 2 23 328 350 327 350 0.94 3 32 0.0087 0.73 11.2 1.7 2 23 356 378 355 378 0.94 4 32 0.016 1.4 10.4 0.8 1 23 383 406 383 406 0.96 5 32 0.7 59 5.2 0.1 2 23 409 431 408 431 0.92 6 32 0.11 9.3 7.8 2.2 2 21 438 457 437 458 0.93 7 32 0.016 1.4 10.4 0.3 1 23 517 540 517 540 0.91 8 32 0.025 2.1 9.8 0.2 3 23 569 590 567 590 0.94 9 32 0.027 2.2 9.7 0.4 2 23 613 636 612 636 0.95 10 32 0.0012 0.1 13.9 0.6 3 20 643 660 641 664 0.90 11 32 0.84 71 5.0 0.3 1 23 669 692 669 692 0.96 12 32 0.00025 0.021 16.1 0.2 2 23 698 720 698 720 0.96 13 32 0.00015 0.013 16.8 4.8 1 23 724 747 724 747 0.97 14 32 0.0057 0.48 11.8 0.9 2 23 754 775 753 775 0.96 15 32 0.11 9.4 7.7 1.2 1 23 781 804 781 804 0.93 16 32 0.17 14 7.2 0.7 1 23 841 863 841 863 0.95 17 32 0.42 35 5.9 0.1 2 23 891 913 890 913 0.89 18 32 4.6e-05 0.0039 18.4 0.3 2 23 934 956 933 956 0.96 19 32 0.0002 0.017 16.4 3.0 1 23 961 983 961 984 0.96 20 32 2.2e-05 0.0019 19.4 0.6 1 23 988 1011 988 1011 0.95 21 32 0.22 19 6.8 0.3 2 23 1014 1036 1013 1036 0.95 22 32 0.087 7.3 8.1 1.3 2 20 1042 1060 1041 1065 0.91 23 32 0.0032 0.27 12.6 1.9 2 23 1111 1133 1110 1133 0.94 24 32 1.7 1.4e+02 4.0 0.1 2 23 1162 1184 1161 1184 0.94 25 32 0.085 7.2 8.1 0.8 1 20 1206 1225 1206 1240 0.94 26 32 1.3 1.1e+02 4.4 0.0 2 23 1313 1336 1312 1336 0.94 27 32 2.6e-05 0.0022 19.2 0.1 3 23 1343 1364 1342 1364 0.94 28 32 0.0046 0.39 12.1 2.8 2 23 1369 1391 1368 1391 0.94 29 32 0.015 1.2 10.5 5.1 1 23 1396 1419 1396 1419 0.96 30 32 3.2e-05 0.0027 18.9 5.0 1 23 1423 1446 1423 1446 0.97 31 32 0.00037 0.031 15.5 0.3 2 23 1453 1474 1452 1474 0.96 32 32 1.3e-05 0.0011 20.1 0.6 1 23 1480 1502 1480 1502 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATTGTGGTGAAGGAGAGCCCCGGGCTTTGCCGGTGCTGTCTCTCCGAAGGATGCTACAAGGATTTGGGCACCGAATATACTTGGATGAATGAAACAGAGGTTTATGCTGATATGCTGCTCGAATGCTTCGATATTAGCATAACCCAACACAATGAAGGTCCAAATGGTCCAAACCGGCTcatctgtgaagtctgcatCACTCGGTTGCGGGATGCATGCAACTTTAAGAAACAAGTCATGGACTCGGAGAAGAAATTCATTGATATGATGGGCAGGGGGGAATTTAGACCCAAGATGCTTATCTACCAGGCGCAGCTGAAATGTGAAGGTCCAGCTCCAGTGGAGGATCCTGACGATGAAGATGTAGAATATCTTGAGGACGATATAGATTTTGCTGAGGTCAACCTCAAAGACGAGTTAACACAGCCTTCAGTATCAGACGCCACCGTAGCCATGCCGGTCAAAGGCAAGCGTGGTCGTCCTCGCAAGAACACACCAGTGAAGCCGGACAAGAGGGCCAAAGTGGCTAAAGTTGACGAAAAGGCCAAGACGTCGAAAGCTGTTGCTAAAGGTAAAAAACCGAGGAAATACAAGGGCACAGAGTCTTCCTCGATGAGAAGGCGACGGAACCTACAAATATTATTCAACAACACATCTATTATTCCTTTTAAATGGCGTGGGAAGTACCTGTGTTTCTATTGCAGTAAAGACATTGCGGAGTATACAGAGTTGAGAAAACATACGAAAGCACATGGCAGCTGTTCCATAAAAGACCATTCTCTCAAAGTTTTAAAAGGAGGCCAGAACATGGAAATTAAAGTAGACATATCATTGATCACTTGCGAATTGTGTGCGGAGACGTTACCGTCTTTCGATGAAATCGTCACTCATTTGTTTGATAAACATGAACTTGAATATGATAAAGAAGTAGAAATGGCTATAGAAGAGTATAAACTTGCTGATCTCAGTTGTACGGGATGCGATGAAAAGTTCACGTATTTCGGATACCTTGTCTCTCATGTCAATAATACCCACCCGAAAAACTGCCTTATTTGCGATAACTGCaaccaaaaattcaataaaaggAGAGATCTGTTTTCTCACGTGAAAAATTATCATCGGGAAGGAGGGTATCAATGCGAAATGTGCCCTCAAATCTTCAattccttgaatattttgagaaAACACCGAAATAACAGGCATTTGACTCGATGCAACATTTGCAATTTGAAACTGCCGTCAGCTGCTTTGAGACAAAAACATATCGATTTAGAACATCCAGACGACGGGTCTTTGCAATGTGATACCTGTTTTAAAGAGTTCCATACGAAACAGGGCCTCAAAATGCATTCAAGGAAATGCAAAGGAGAGGAGATTTTCGGAATCGCCATCAAAGAAGAAAACGTTGCCATGGACTTGGACCTAAACTACGAGGATCAATCCAAAAAACCTTGCGTCAAACAAATCAGAGAAAATATAGTTATAGTCATAAACATGTCTACGGCAAtaccttttaatttttataagaaTAAGTTCAACTGTTTCTACTGCTCAAAAGATTTCGCCGATTCCGATTTGATGAGGGAACACGCGGTTATGGAACATCCTGTGTGCGATATAAAACAGAAATGTATTAGGAAGTGTAGGGAGTCCGTCGCTTGCGTGAAAATCGATATTTCTTCACTCGCTTGCAAAGTCTGCTTCGAGTCATTAACTGACTTGGATCATTTGATTGATCATTTAATCGTAAAACACGATGCGAAGTACGACAAATCGATAACAACATGTCTGcaaccttataggctgattaaagaCAACATGGTCTGTCCACACTGTCCCGGCGAAGTATTCCGCTTCTTCGGAACACTGCTTAAACATATGAAcatcaaacatacaaacaacaaTATCATTTGCGTTTACTGCGGCCAAACATTCCGTAGGGATCAAAACTTACGTGTTCACATTTGGCGTCATCACAGAGCAGGGCGTTTCAAATGTACAATTTGTGCTGCTGAGTGCAATATACCATCTCGTCTGTACATGCACATGGCTCGAGCACACGGCGTTAAAGCTGCAAAATGTCCTAAATGCCCCGAATCTTTCGCTACGCAATACGAAAGGCAGAAACATCTGATCATCGCCCACAACACTGGCCACAAATGCTCTTATTGTGGAAAACTCTTTACACGAAACTCCTTTATGAGTAACCATATACGAAGAACGCATATGAAAGAGAAGAGTATAGAATGTTCTGTTTGCTATACAAAGTTCTTTAACACTGTCCTGTTGAAGAGGCATATGGTGAAACATAGCGGGCAGAAGAAATACAGCTGTGATGTGTGTGGGGAACGGTTCTACTGGCGCAAGACCATGAAGACTCATAGAGATAGGCTGCATAatttgGAAACAGAGATGACAAGGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTGCTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGGGACGATACGACGACTCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACGACTAGTTAAATCAGCTGATATAGAAATCAAAATAGACGTATCCGATGTTTCGTGCGAGATTTGTTCAGAAACATTCCCCTTTTTAGACGAAATTATTGACCACTTGATTTTTAAACACCAACTCCCTTATGCAAAAGATGTGGAGATGCTGTTATCAGCATACAGACTGTTAGATCTTCAGTGTCTCCTTTGCGATAAAACCTTCAATTACTTAAGTAAATTAATCAGCCATATGAACGTCGCTCATCCAAAAAACAGCTTTGAGTGTGTCGAATGTAAAAAGAACTTTAATAAAAAGAGGGATTTGGATTCGCACATAAGAATGCATCATAAGAAATGCTATTCTTGTACGAAATGCGATGAAACGTTCCCAACAAACTCCGCGTTACAGATTCATAGGTCTAACTCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTATTTGCGTCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGATTCTAATCAGAGCCAATGTGGATTCTGCAATAAAGTTCTAACAACAAAACAGGCCTTTATAAGACACGCTGCAAATTGCGAACATAAACCTAACGAAGAAACTGTCATAATAGATGACGATGAAGACAAAAAAATACCCGTCaaagaaataagaaaaagtTTAGCATGCATCTTTAACATGACAACCGCACTTCCTTTCAAATTCTTTATGAATAGGCTACGATGTTTCTATTGCACGAAAGACTTCACCTCATGTGAAGATTTAAAAGAACATACTGCTATAGAACACCCTCACTGCGATATATCCTTTAAGTCTATGAGATTAAGGAACAGATATGACGGTGTCCAAATCAAAGTTGATACTTCTTCTTTGTCTTGTAGATTATGCCAAGTCACCTTGGAGGATTTGAACGATTTGATTGACCATTTGAGTAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTCAAACTGATTAAAGACAACTACCCTTGCCCAATTTGCGGGGAAATCTACAGATATTTTGGCGTCCTACTCAAGCACAAATTCGTTGAATTTGACGAGTTACGTCACCATACCAGCCTTGAACATCCTGTATGCGATTTGAAGTCGAAATGCATGAAGAAGTGCAAAGGGGAAAGGATAGCTGTCAAGATTGACATATCTGCATTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAGTCAACCATTTAATAAACGAACATAAGGCGAACTATGATACCTCAATTCCTGGGTGTTTAGAGCCTTTCCGGGTTATAAAAGACAATATGCCATGTCCCATATGCCCGGATACCGTCTTCCGATACTTCGGCATATTGCTCCGACATATGAACTCCGAACACAGCAACAACAACAGGATCTGTGACTTCTGCGGTCGAAGCTTCAGGAATGCGGCGAATCTAAACGTGCATATAACGTATGCACACACAGGTTCCTGTGAATGTGACATTTGTGGGGTTAAATACAAGAACCAGTGGTGTCTAGCGCGACATAGAGCGAGGACACACGATGCGAAGGACCACAAATGTCCAAAATGTCCCGAGCAATTCCAATCTCAGTACCATAAACAAAAACACTTAATAAAAATGCATAATGTGGGGCACAAATGTAGTTACTGCGGGAAAATGTTTACAAGAAACTCTTTCATGAAAGACCATGTCAGGCGCACACATTTGAAGGAAAAAAACATTCCTTGTTCCATTTGCAATGAGAAGTTTTTCGATAATTATCTTTTGAGAATGCATATGGTGAAACATGAGGGGGATAGGAAATTCAGTTGCACTGTTTGTGGGAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCACAAAAAGTATGGGCATGTGCAGTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYQAQLKCEGPAPVEDPDDEDVEYLEDDIDFAEVNLKDELTQPSVSDATVAMPVKGKRGRPRKNTPVKPDKRAKVAKVDEKAKTSKAVAKGKKPRKYKGTESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKAHGSCSIKDHSLKVLKGGQNMEIKVDISLITCELCAETLPSFDEIVTHLFDKHELEYDKEVEMAIEEYKLADLSCTGCDEKFTYFGYLVSHVNNTHPKNCLICDNCNQKFNKRRDLFSHVKNYHREGGYQCEMCPQIFNSLNILRKHRNNRHLTRCNICNLKLPSAALRQKHIDLEHPDDGSLQCDTCFKEFHTKQGLKMHSRKCKGEEIFGIAIKEENVAMDLDLNYEDQSKKPCVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHAVMEHPVCDIKQKCIRKCRESVACVKIDISSLACKVCFESLTDLDHLIDHLIVKHDAKYDKSITTCLQPYRLIKDNMVCPHCPGEVFRFFGTLLKHMNIKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICAAECNIPSRLYMHMARAHGVKAAKCPKCPESFATQYERQKHLIIAHNTGHKCSYCGKLFTRNSFMSNHIRRTHMKEKSIECSVCYTKFFNTVLLKRHMVKHSGQKKYSCDVCGERFYWRKTMKTHRDRLHNLETEMTRHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTTTPDRLRKHTKGHGPCSDSDRAIRLVKSADIEIKIDVSDVSCEICSETFPFLDEIIDHLIFKHQLPYAKDVEMLLSAYRLLDLQCLLCDKTFNYLSKLISHMNVAHPKNSFECVECKKNFNKKRDLDSHIRMHHKKCYSCTKCDETFPTNSALQIHRSNSHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVLTTKQAFIRHAANCEHKPNEETVIIDDDEDKKIPVKEIRKSLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEDLKEHTAIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCQVTLEDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEIYRYFGVLLKHKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLVNHLINEHKANYDTSIPGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -