Aanc023040.1
Basic Information
- Insect
- Apamea anceps
- Gene Symbol
- -
- Assembly
- GCA_951799955.1
- Location
- OX637521.1:11077947-11078429[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-09 4.3e-06 27.2 0.0 1 40 18 58 18 63 0.86 2 2 7.4 3.4e+03 -1.3 0.0 15 22 141 148 128 148 0.73
Sequence Information
- Coding Sequence
- ATGCCAAATGAATACAAAAGAAAACCTTCTGGCTCTAATAGAGCTACATGGAGTGAAGAAGACTTGGAAAAAGCCATTACTCTAGTAAAAGATAAATCTTTAAATCTTTTTCAAGCAAGTAAAGAATACAATATTCCTTACAGAACTCTTCGTCGTCGATTTCTCATAGGCAATACTAAAAAAGGACGACTTGGACCTGACTCTCTGTttggaaacaaagaaaaaaagattGTTAATCATATTAAGAAGTTGCAAAGCCGTGGATTTGCACCTACTGTTAATGATTTACGCCAGTTGGCTTTTAAATTTGCTGAAAGTTTAAACCTTCAACATAATTTTAACAAGGAAACAGGGAAAGCAGGATGTGATTGGGTTAAGTCTTTTTTACGTAGAAATCCTGAAGTTTCATTAAGGAAGTCGGAAGGAGTGTCTCTACAAAGAGCTAAAGGAATGACACCAGAGGAAGTTTATCCTTTTTTTTGA
- Protein Sequence
- MPNEYKRKPSGSNRATWSEEDLEKAITLVKDKSLNLFQASKEYNIPYRTLRRRFLIGNTKKGRLGPDSLFGNKEKKIVNHIKKLQSRGFAPTVNDLRQLAFKFAESLNLQHNFNKETGKAGCDWVKSFLRRNPEVSLRKSEGVSLQRAKGMTPEEVYPFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00122323;
- 90% Identity
- iTF_00122323;
- 80% Identity
- -