Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.00074 0.34 11.5 0.3 1 24 3 26 3 27 0.94

2 3 7.8e-13 3.5e-10 40.3 0.1 1 41 42 82 42 86 0.93

3 3 9.8e-13 4.4e-10 39.9 0.0 1 41 232 272 232 276 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.00074	0.34	11.5	0.3	1	24	3	26	3	27	0.94
2	3	7.8e-13	3.5e-10	40.3	0.1	1	41	42	82	42	86	0.93
3	3	9.8e-13	4.4e-10	39.9	0.0	1	41	232	272	232	276	0.93

Coding Sequence: ATGTGGACAGAAGAAGATTTACGTGCAGCTATGGCAACTGTTAGAAACGGACATATGACACAGACAGCTGCAGCAAAACGTACTATTGAATTTGGTTCTAACCATTCAAAACGTGCCACGTGGACAGAAGATAACTTACGAGCAGCTATGGAAGCTGTTACAAGCGGACATATGACACGGAGAGATGCAGGAAAACGATATGGAATTCCAAAACGAACTCTCTACCGTCATTTGAAAACAGGAAGCTTAGTAAAAAGACTGGGACGAAAGTCAATGTTCGGCGAGGTACACGAAAAAGAACTCGTGAAAAGATTACTGAATCTTTCAAACTATGGGGTGTCTCTGACATCGAAAATAATTCGCAAAGAAGCCTTTGATTTTTGtctagaaaataatattgaacaTGTTTTTAATGTTACTACGGGCCTTGCAGGCACTGATTGGTACTATTGGATTTGCTTCAAACCATGCAAAACGTGCTATGTGGACAGAAGAGGACTTACGGGCCGCTATGGAAGCTGTTACAAGTGGACGTATGACACGGAGAGACGCAGGAAAACGATATGGAATTCCAAGACGAACTCTCTACAGTCATTTAAAAACAGGAAACGTAGTGAAAAGACTGGGACGAAACTCAATGTTCGGCGAGGTACTATTGGATTTGGTTCGAACCATGCAAAACGTGCCATGTGGACAGAAGATGACTTACGTGCAGCTATGGAAGCTGTTACAAGCGGACATATGACACGGAGAGATGCAGGAAAACGATACGGAGTTCCAAGACGAACTCTGTACCGTCATCTGAAAACAGGAAGCTTAGTGAAAAGACTGGGACGCAACTCAATGTTCGGCGAGGTTCGAAGCTTGCAAAACTACCTTTGTGGACAGAAGAAGACCTTCGTGCTGCTATGGCAGCGGTTACCTGGGGATATATGA
Protein Sequence: MWTEEDLRAAMATVRNGHMTQTAAAKRTIEFGSNHSKRATWTEDNLRAAMEAVTSGHMTRRDAGKRYGIPKRTLYRHLKTGSLVKRLGRKSMFGEVHEKELVKRLLNLSNYGVSLTSKIIRKEAFDFCLENNIEHVFNVTTGLAGTDWYYWICFKPCKTCYVDRRGLTGRYGSCYKWTYDTERRRKTIWNSKTNSLQSFKNRKRSEKTGTKLNVRRGTIGFGSNHAKRAMWTEDDLRAAMEAVTSGHMTRRDAGKRYGVPRRTLYRHLKTGSLVKRLGRNSMFGEVRSLQNYLCGQKKTFVLLWQRLPGDI

Sequence clustering based on sequence similarity using MMseqs2