Achi015359.1
Basic Information
- Insect
- Antitype chi
- Gene Symbol
- -
- Assembly
- GCA_947359405.1
- Location
- OX375834.1:5745744-5754773[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.14 11 7.2 3.8 1 23 254 275 254 275 0.98 2 9 0.012 0.96 10.5 3.7 2 23 302 324 301 324 0.95 3 9 0.0025 0.2 12.6 4.5 1 23 345 367 345 367 0.98 4 9 0.0021 0.17 12.9 1.4 1 19 371 389 371 394 0.91 5 9 0.00041 0.032 15.1 0.5 2 23 400 422 399 422 0.90 6 9 0.092 7.3 7.7 0.6 2 21 429 448 428 451 0.88 7 9 4.1e-05 0.0032 18.3 4.4 1 23 458 481 458 481 0.98 8 9 0.00045 0.036 15.0 1.1 2 23 488 509 487 509 0.96 9 9 3.3e-06 0.00026 21.7 1.0 1 23 515 537 515 537 0.98
Sequence Information
- Coding Sequence
- ATGATGGTGTCTGCCACCGAGGCGCAGCTACTCAAAGCTATCGTTTTTAAGAGCGAACCGGACGATGATACTGAAATTGTTGCTGATCAACAAAATTTCGCAACCGAAATTAAAATAGAAAATGCCGAAGAATATTTTGACATGGAAGAAGAGTTCTCACAAGAAAGTTCAGAGGGCTCTGTCTTTAGTGAAGGAACGAATGAAGATGAATGGATGAGTGATGGTGAACGTATGAATGAAGATGAACGAAAGGAATATGAACGAATGATTGAGCAACGAATGAAAGAGGATGATGAAGATGATGATTGGTCAAGCGGGTCCAGTGAAAACGAACTTGTGATCGATGAGACGAGAGAAATAGCGTACTCAGACTCCGATACAGATGACGATGTTGACGGTGTTGGTAATGATGATTGTGAAAGTACTTACAGCTCTATCACCATGAGTACCACCAGTGCCCTTGATGACGAGCCATGTCAAATAATAGAAGGAGAACAGAAGCTGTTGTGTCGCTTTCCTACGTCCCCTCCACCGCCGCTGCCTAAACGGAACGAACTGCGAGACTTATGCCCTCTTTATAATCAGCACTTGATAGAATTTGGAGAAAAAATTGTCAAACCAGAATCAATAGGATGGTACTTCAACTTACCCGAATTAAATGAAAAAATATTGTCAGAGAAGCAAGCTCTCACTGTAAATGCGAGCACAATCTTTCAATACAGCAATGCAACTGCCTTCAAAACTAAAACGAGGAAAGGATACACTTGTTTTTATTGCCGAGAAGCGTATAAGTTCGATAAATTAAAAGAACATCAAAAGAAACACTCAAAAACAAGCATCTCTAAGCTACTCAGCAAATTCAATGCTGACGAATTTGTTGTCTATGCCGACATCACGAACTTAAAATGCACAATTTGTAAAAAGAAGATAAAAAGTATCAAAAAATTAAAGAAACACTTGACTAAAAAGCACGGAAGGAAGATATACCCAAGTGCGGACCGAGTGATCCCTTTCAAATTGACAGATACAGACTTCGAATGTCAAAAATGTCGACGGAAATTTGACACTTTTTGTGCGGTTGAAAAACACATGAATACTCATTTCGGGACCTTTAAGTGTAGAGATTGCGGGGCTACTTTCATAACGAAACATAGACTAGCAGTACATAACTACGACCAACACAAAGACGAAAAAGTTGTCTGCGACATCTGCAAGAAAAGCTTTCGCACACAGCTGAAGTATCGTCAACATTACGATGGCGTCCACAAAAACATCAAGAAACTCAAATGCTCGCAATGTCCGGAGAAATTCATTGATTTCTTTACTAGACAAAAACATTTGGTAGACGTGCATTCTGAAGCCCCCTTGTTGTACAAATGTAATGTCTGTGACAAAGGGTTTAATAGAAGATTTAGTTTATCTTCCCACGTCAAACGTTGTCATACGGACAAGAAGAATATAAAATGCCTGGAATGTCCATACACTTGTTATACTAACAGCGAATTGAAAGACCATGTAATCAAACATCAGACTCCGCAGAAATTTGAATGTCCAATTTGTAAGAAGACGTACGGTAGGAACCGGACGCTGGTGACGCATTTGAAGACACATAAAGATCATACTTAG
- Protein Sequence
- MMVSATEAQLLKAIVFKSEPDDDTEIVADQQNFATEIKIENAEEYFDMEEEFSQESSEGSVFSEGTNEDEWMSDGERMNEDERKEYERMIEQRMKEDDEDDDWSSGSSENELVIDETREIAYSDSDTDDDVDGVGNDDCESTYSSITMSTTSALDDEPCQIIEGEQKLLCRFPTSPPPPLPKRNELRDLCPLYNQHLIEFGEKIVKPESIGWYFNLPELNEKILSEKQALTVNASTIFQYSNATAFKTKTRKGYTCFYCREAYKFDKLKEHQKKHSKTSISKLLSKFNADEFVVYADITNLKCTICKKKIKSIKKLKKHLTKKHGRKIYPSADRVIPFKLTDTDFECQKCRRKFDTFCAVEKHMNTHFGTFKCRDCGATFITKHRLAVHNYDQHKDEKVVCDICKKSFRTQLKYRQHYDGVHKNIKKLKCSQCPEKFIDFFTRQKHLVDVHSEAPLLYKCNVCDKGFNRRFSLSSHVKRCHTDKKNIKCLECPYTCYTNSELKDHVIKHQTPQKFECPICKKTYGRNRTLVTHLKTHKDHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01247502;
- 90% Identity
- iTF_01247502;
- 80% Identity
- -