Achi001749.2
Basic Information
- Insect
- Antitype chi
- Gene Symbol
- -
- Assembly
- GCA_947359405.1
- Location
- OX375833.1:13796690-13797874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.2e-05 0.0041 17.9 2.8 1 23 138 160 138 160 0.97 2 9 0.001 0.081 13.9 4.1 2 23 166 188 165 188 0.97 3 9 7.1e-05 0.0056 17.5 0.8 2 23 197 218 196 218 0.94 4 9 2.8e-05 0.0022 18.8 1.1 2 23 222 243 221 243 0.97 5 9 3.7 2.9e+02 2.7 1.2 2 23 257 279 256 279 0.92 6 9 3.8e-06 0.0003 21.5 1.8 1 23 285 307 285 307 0.98 7 9 0.00084 0.066 14.1 1.8 2 23 314 335 314 335 0.98 8 9 0.00067 0.053 14.4 0.7 3 23 343 363 341 364 0.95 9 9 0.003 0.24 12.4 2.5 1 23 368 391 368 391 0.95
Sequence Information
- Coding Sequence
- ATGGCTCCTCCAGACGATTCAGACGAGACTCTACTTCTAGATGAGGATGACTTTGTAGATGAAAGTCAACTCAAAATTGATGTACTAGAGGATGAATTTAGACTGAAATCTGAGAGCGAAAGTGAATCTGAACCAGAAGATATAGTAGAACCTACTCCACAAAAGAAACCCGCAACAAAACTAGAACCAGAAGATATATTCGAACCATCTCCACCAACAAAACGATTCAAAGTAGACCTAATATCAAATCTTGACATAGAGAATTTAGCGAAGAATGCCACTAAAACTTATAGAAATAAAAAGTTGGTTAACGGCTTGCAGCAAAGTTCCAAATACCCTGTCGATGTGTGTAGCGAATTTTTAACGTTCAACAATAGGAAACAAGTTGAAAATGAAAAGGCTTTCTTTAAATTCACTTGTCCGTTGTGTAGTAAACATTTCATATCTGAGTATTTCTTAAAAAGACATATTGTGAAACATGTCAATAAGAAAGTGCAGTGCAATATCTGTCATGGTGTCTTTAAATCCAAATTCCATTTGTATGAACATACTAAAATGACACATTTACTAAAAGAGAGCTTTTATATGACTTGTAAAGTGTGCGGCAGGAATTTTACTGATACAGATAAGTTACAAACTCATGAAGAAAACCATAGAATTAAACCTTGTCAACTTTGCAATAAAGTCTATGTTACCCAAGCTCATTACGAGAATCACATCCAAAGACACGCAGTCAAACTCAAGCTTTTTAACGAAAATCAAACTCAAACATGCAGTTTTTGCGAGAAAGAATGTTTAAACGACAATGAACTCTCTGTGCATGTTAATAAGATACATTTACAAATCAAACCATACAGTTGCGATATGTGTGATAGACAATTTTATACTGAAAGTAATTTGAGGAGCCATAAAAAGGTACATAGTATGCCCTCGAAAGAAACGTGCGAATTTTGTAGCAAAACTCTTAGAAGTCGGAAAAGTTTAGTAATTCATGTTCGGAAACACATTGGGGCCAAGCCTTTTGGCTGCCAAGTTTGCGGCCAAGCATTCTACTCAGCTTTTAAAGCTAGAGAACATATGAGAATACATCACGGTGGCCGATTCTGCTGTAGAATTTGTAAATCTATCTTCGCAACCAAATATGAACTTAAAGAACACGTTAGTAAAGATCATAATATCATTTAG
- Protein Sequence
- MAPPDDSDETLLLDEDDFVDESQLKIDVLEDEFRLKSESESESEPEDIVEPTPQKKPATKLEPEDIFEPSPPTKRFKVDLISNLDIENLAKNATKTYRNKKLVNGLQQSSKYPVDVCSEFLTFNNRKQVENEKAFFKFTCPLCSKHFISEYFLKRHIVKHVNKKVQCNICHGVFKSKFHLYEHTKMTHLLKESFYMTCKVCGRNFTDTDKLQTHEENHRIKPCQLCNKVYVTQAHYENHIQRHAVKLKLFNENQTQTCSFCEKECLNDNELSVHVNKIHLQIKPYSCDMCDRQFYTESNLRSHKKVHSMPSKETCEFCSKTLRSRKSLVIHVRKHIGAKPFGCQVCGQAFYSAFKAREHMRIHHGGRFCCRICKSIFATKYELKEHVSKDHNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01093418;
- 90% Identity
- -
- 80% Identity
- -