Achi015392.2
Basic Information
- Insect
- Antitype chi
- Gene Symbol
- -
- Assembly
- GCA_947359405.1
- Location
- OX375834.1:6284536-6304573[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0041 0.33 12.0 3.9 1 23 243 266 243 266 0.95 2 17 1 82 4.4 0.3 2 23 292 314 291 314 0.95 3 17 0.36 28 5.9 2.5 1 23 363 385 363 385 0.95 4 17 0.012 0.96 10.5 1.4 2 23 457 479 456 479 0.94 5 17 0.004 0.32 12.0 1.7 2 23 485 507 484 507 0.94 6 17 0.013 1.1 10.4 0.5 1 23 512 535 512 535 0.94 7 17 0.37 29 5.8 0.4 2 23 538 560 537 560 0.92 8 17 0.0084 0.67 11.0 2.0 2 22 567 587 566 587 0.95 9 17 0.0055 0.43 11.6 0.4 1 23 646 669 646 669 0.92 10 17 0.028 2.2 9.4 0.2 3 23 698 719 696 719 0.92 11 17 0.013 1 10.4 0.4 2 23 742 765 741 765 0.95 12 17 0.00058 0.046 14.6 0.6 3 20 772 789 770 793 0.90 13 17 0.65 51 5.0 0.4 1 23 798 821 798 821 0.95 14 17 0.00018 0.014 16.2 0.1 2 23 827 849 827 849 0.96 15 17 0.00036 0.029 15.3 5.0 1 23 853 876 853 876 0.97 16 17 0.00024 0.019 15.8 1.0 2 23 883 904 882 904 0.97 17 17 0.12 9.1 7.4 1.2 1 23 910 933 910 933 0.92
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAAATTGTGGTGAAGGAGAGCCCCGGGCTTTGCCGGTGCTGTCTTTCCGAAGGATGCTACAAAGATTTGGGCACCGAATATAACTGGATGAATGAAACAGAGGTTTATGCTGATATGCTGCTCGAATGCTTTGATATTAGCATAACTCAACACAATGAAGGTCCAAATGGTCCAAACCGGCTCATCTGTGAAGTCTGCATCACTAGGCTGCGGGATGCCTGCAACTTCAAGAAACAAGTCTTGGACTCGGAGAAGAAATTCATTGATATGATGGGCAGAGGAGAGTTCAGACCAAAGATGCTTATCTATCAGGCACAGCTGAAGTGTGAAGCCCCAGCTGCGGAAGACGAGCCTGACGGTGATGACGTTGAATATCTTGAAGACGAACTTGATTTTAGTGAAGTTAACCTCAAAGACGAATTAACACAGCCTTCAGTATCAGACACCACGGTAGCCACGCTTCCGGTCAAAGGCAAGCGTGGTCGTCCTCGCAAAAACACTCCAGTGAAGCCAGATAAGAGGGCCAAATTGGCAAAAGCCGATGATAAGGCCAAGACGTCGAAAGCTGTTGCTAAAGGTGTCAAACGGCGCACTACAGAGGCTTCGAGTAAGTCCTCAATGACGTCCACAAGACGCAACAAATTAATGAAGACAAACGCTATCATAGTTCTAGAAACTTCCACCGTCATCCCCTTCAAATGGCATAGACAAAATTACCTCTGTTTCTTCTGCCATCTGACTTTCAAAGACACTGAGTTGCTCAAAGATCATACTAGAACTCAGCATAAGAAATCTAATATCAAAGCTGCTGTTTCGTACTTAAGAAGAGATGAGAAGGTTAAAATTGACGTGTCCGTAGTACAATGTCGGTCTTGCAGTGATAAATTTGACGATCTAAACGCTCTTATAGAACACTTAAAAAGCACACACAAAATTTGTTTCACAGAAGAGTGCGGTTACGGTAATAAACCGAGGAAATACAAGCGCACAGAGTCATCCTCGATGAAAAGGCGACGGAACCTACAAATACTATTTAACAACACATCTATTATCCCTTTTAAATGGCGTGGGAGATACCTATGCTTTTATTGCAGCAAACATATTGCCGAGTATACAGAGTTAAGGAAACATACGAAAGCACACGGCAGCTGTTCCACTAAAGATCATTCCCTTAAAGTCCTCAAAGGAGGACAGAACATGGAAATTAAAGTAGACATATCATTGATAACTTGTGAAGTGTGCGCAGAGAAGTTACAGTCTTTCGATGAAATCGTCACTCATTTATTTGACAAACATGAACTAGAATACGATAAAGGAGTAGAAATGGCTATAGAAGAGTATAAACTTGCTGATCTCAGTTGTACGGGATGCGATGAGAAGTTCACGTATTTCGGCTGCCTAGTATCTCACGTCAATAATACCCACCCGAAAAACTGCCTCATATGCGAAAACTGCAATCAAAAATTCAACAAAAGGAGAGATCTATTTTCACACGTTAAGAATTATCATCGAGAAGGAGGGTACCAATGCGAAATGTGCCCCCAAATATTTAACTCATTGAATATTTTGAGAAAACACCGAATTAACAGGCATTTGACTAGATGCAACATTTGCCATTTGAAACTGCCGTCAGCTGCTTTAAGACAAAAACATATCGACTTAGAACATCCGGACGACGGGTCTTTGCAATGCGATACCTGCTTCAAAGAGTTTCACACGAAACAAGGCCTCAAAATGCATTTGAGGAAATGTAAAGGAGAAGAGATTTTCGGAGTCGCCATCAAAGAAGAAAACGTTGCCATGGACTTAGATTTAAACTACGAGGATCAATCTAAAAAACCTTGCGTCAAACAAATCAGAGAAAATATTGTTATAGTCTTAAACATGTCTACGGCAATACCTTTTAATTTTTATAAGAATAAGTTCAACTGCTTTTACTGCTCCAAAGATTTTGCCGATTCCGATTTGATGAGGGAACACACGGTGATTGAACATCCTGTGTGCGATGTTAAAGAAAAGTGTATTAAGAAATGTAGGGAGTCCGTAGCCTGCGTCAAAATCGATATTTCTTCACTCGCTTGCAAAGTCTGCTTCGAGTCATTAACTGACTTAGATCATCTGATCGATCACTTAATCGCGAAACACGATGCGAAATACGACGAATCGATAACAACGTGTTTGCAACCTTATAGGCTCATTAAAGACAACATGGTCTGTCCACACTGTCCCGGCGAAGTATTCCGCTTTTTCGGAACTCTTCTTAAACATATGAATATCAAACATACCAATAACCATATCATTTGCGTTTACTGCGGCCAAACATTCCGTAGGGATCAAAACTTACGAGTTCACATTTGGCGTCATCACAGAGCTGGGCGGTTCAAATGTACCATTTGTGCGGCTGACTGCAATATACCGTCACGTCTGTACATGCACATGGCTCGAGCTCACGGCGTAAAAGCCGCTAAATGTCCAAAATGCCCCGAATCTTTTGCTACGCAATATGCAAGGCAGAAACATTTGATCATCGCCCACAACACTGGCCACAAATGCTCTTTTTGTGGAAAACTCTTTACACGAAATTCCTTTATGAGTAACCATATACGAAGAACGCATATGAAAGAGAAGAGTATAGAATGTTCTGTCtgttatacgaagttctttaacaatgtcctgttgaaaagacatatgttgaagcatagcgggcagaagaagtatagctgtgatgtgtgtGGGGAACGGTTTTTCTGGCGTAAGACTATGAAGACGCATAGAGATAGGCTCCATAGTAAACAGATTTATCCTGCACCCATGTAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYNWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMMGRGEFRPKMLIYQAQLKCEAPAAEDEPDGDDVEYLEDELDFSEVNLKDELTQPSVSDTTVATLPVKGKRGRPRKNTPVKPDKRAKLAKADDKAKTSKAVAKGVKRRTTEASSKSSMTSTRRNKLMKTNAIIVLETSTVIPFKWHRQNYLCFFCHLTFKDTELLKDHTRTQHKKSNIKAAVSYLRRDEKVKIDVSVVQCRSCSDKFDDLNALIEHLKSTHKICFTEECGYGNKPRKYKRTESSSMKRRRNLQILFNNTSIIPFKWRGRYLCFYCSKHIAEYTELRKHTKAHGSCSTKDHSLKVLKGGQNMEIKVDISLITCEVCAEKLQSFDEIVTHLFDKHELEYDKGVEMAIEEYKLADLSCTGCDEKFTYFGCLVSHVNNTHPKNCLICENCNQKFNKRRDLFSHVKNYHREGGYQCEMCPQIFNSLNILRKHRINRHLTRCNICHLKLPSAALRQKHIDLEHPDDGSLQCDTCFKEFHTKQGLKMHLRKCKGEEIFGVAIKEENVAMDLDLNYEDQSKKPCVKQIRENIVIVLNMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHTVIEHPVCDVKEKCIKKCRESVACVKIDISSLACKVCFESLTDLDHLIDHLIAKHDAKYDESITTCLQPYRLIKDNMVCPHCPGEVFRFFGTLLKHMNIKHTNNHIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICAADCNIPSRLYMHMARAHGVKAAKCPKCPESFATQYARQKHLIIAHNTGHKCSFCGKLFTRNSFMSNHIRRTHMKEKSIECSVCYTKFFNNVLLKRHMLKHSGQKKYSCDVCGERFFWRKTMKTHRDRLHSKQIYPAPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274666;
- 90% Identity
- -
- 80% Identity
- -