Achi001325.1
Basic Information
- Insect
- Antitype chi
- Gene Symbol
- -
- Assembly
- GCA_947359405.1
- Location
- OX375825.1:19732759-19737464[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.24 19 6.4 0.1 2 23 33 53 33 53 0.96 2 13 4.4e-05 0.0035 18.2 0.8 1 23 59 82 59 82 0.95 3 13 6.5e-07 5.1e-05 23.9 3.1 1 23 88 110 88 110 0.96 4 13 1.3e-05 0.001 19.8 0.1 1 23 116 138 116 138 0.98 5 13 9.1e-05 0.0072 17.2 0.1 1 23 143 165 143 165 0.97 6 13 0.0015 0.12 13.3 4.1 5 23 174 192 171 192 0.96 7 13 0.22 17 6.5 0.4 2 23 253 273 252 273 0.90 8 13 0.028 2.2 9.3 0.3 2 23 475 497 475 497 0.96 9 13 1.8e-06 0.00014 22.5 3.5 1 23 503 525 503 525 0.97 10 13 0.00011 0.0086 16.9 2.2 1 23 531 553 531 553 0.98 11 13 0.0085 0.67 11.0 2.5 2 23 560 581 559 581 0.96 12 13 2.2e-06 0.00017 22.3 0.8 1 23 587 609 587 609 0.98 13 13 0.00025 0.02 15.8 0.3 2 23 615 637 614 637 0.94
Sequence Information
- Coding Sequence
- ATGCCAGAAGAAAGCGTCCAAGAAAACGACAAAACGAAAGTCGAAATTATCGAGAAACCGGAGTTTACAATAACCGAGAACGGCAAACGATACGCGAAGTGTGGCGTGTGCCAGAAGAGTGTGTCCGTGGGCGGGTGGGCGCGGCACATGCGCGCGCACCGCGGCGAGAGGCGGCACAGCTGCCACACGTGTGGGCTCGCCTTCAACGACGTCGGCAACCTAGCGCGCCACACGCGGGCCATACACTCCAAGCAACGACCACACGCCTGCCCCACGTGCCCCAAAACATTCTCACGGAAATCTCACCTAGAAGACCACGTAAAGTCCCATTCAGAGAGTAGGACATTCGTGTGTGATATATGCGGGAAGGGATCCAAATCAAGCGCAGCACTACGCATGCACGCGCGCACGCACGATGCATGCCGGTTCCCGTGCGTACAGTGCGGCGCACAGTTCAAGCGACGCGGCGAGTTGAACGCGCACGTGTCTGTGCATACCGGGGAGAAGGCACATGTCTGCCATTGCGGGAAAACTTTCCGATTGCGAAGCCAGCTGACAGCACATAATAGAGTGCATCAAAAAACACGGGAGCACGATATGGAAGAGCTAATCAATGTTAACAATACACTAGGGCCCAAGCCCGAGACCTCTCGTCTGCACCCGCAGCAGTACCGCACGTGCGTGTACTGCGCTACCACGCACTCCCTCGCCTCCTACCGGAAGCACCTCGTCGGCAAGCACACCCACCAGCTGTTCCTTTGCGACGACTGCGACACCTTCGTTGACAAGAAGGACATACAGAGGCACATTGACTACCACGCCCTACAGTACGGCTCATATGGTAATTCTAGGAACATATTTTGGCATATGAGGATGGAAGAATCTGTCAATCAGAATCCCGGCCCAGTGCCTCCAGCCCCTGCTCCTCAGTGTTCACCGAAAACCGAAGGTCCACAGAGCTCATTGAAAACCGAAAGTAAACCATTCATTAAAACCGAACCCCCCATGGTGGGGAAAAAGGAAACGAGGGTCCATGAGAATGACTTCTCAGATCACAGTGATATGGACGGCTTCGGACCTCTACCTGCGTCTGTGTTCGAAGCTATCGAGGACTCGCAAGACAGCCAGCATTTAGAAGATAATAACACTCACACGCCTGAGAATCAGCCACACAGTGACGAGTCCAGAAATTGTTCACAACCCGAAAACAAAAATTTAAGTAATCATGCTCCGTGTTTGGAAAAAAATACCAAATGTAATCATTGTTCAGTAGTTATACAGCCAATCAATATAAATAACCATGCCCAAATTAATATATCAATTAAAAATAGTAATGTGAAGAACAATCAAATTCCCCCAAAAACTACTGACGCTCTTACTAGTGGTAATCACGAAAAGGAGAAGAAGAACCAGAAGACACGACAGTGTCCCTTCTGTCTTAAAGAATTCAGAGCAGCGTCCAGCTACTACTACCACCTGAAATACGTCCACAAAGACATCAAGGAACACGAATGCGAAGTGTGCGGCAGAAAGTTCAACACTAGATCCTGCTTGACGCGACACATGGCCATTCACGCCGCACAGCGCGAGTTCGAATGCCAACAGTGTCAGAAACAGTTCAAGACTAGAGCGAGCCTCTACATGCACGAGCAGACGCACAGCGGTAAGAAGCCGTGGTCATGCAGCCAGTGCAAGATGTCGTTCAGATGGAATACGCAGCTGCTGAAGCACAGAAAGAGGCACGCAGCGGAGAAGGGGCACGTCTGTGACACGTGTGGGCGCGGGTTCAGCGTGCGGAGCGATCTGCTGCGGCACGCGCGCACGCACTCTGCCGGGACCATCCCCTGTGATAAATGTGGACAGAAATTCGCTCAGCTGCGGTATTTGAAAGTGCACACTGCGAAGCAGCACTCGACCAATGTACGAAGGAAGGTATCTAAGTAA
- Protein Sequence
- MPEESVQENDKTKVEIIEKPEFTITENGKRYAKCGVCQKSVSVGGWARHMRAHRGERRHSCHTCGLAFNDVGNLARHTRAIHSKQRPHACPTCPKTFSRKSHLEDHVKSHSESRTFVCDICGKGSKSSAALRMHARTHDACRFPCVQCGAQFKRRGELNAHVSVHTGEKAHVCHCGKTFRLRSQLTAHNRVHQKTREHDMEELINVNNTLGPKPETSRLHPQQYRTCVYCATTHSLASYRKHLVGKHTHQLFLCDDCDTFVDKKDIQRHIDYHALQYGSYGNSRNIFWHMRMEESVNQNPGPVPPAPAPQCSPKTEGPQSSLKTESKPFIKTEPPMVGKKETRVHENDFSDHSDMDGFGPLPASVFEAIEDSQDSQHLEDNNTHTPENQPHSDESRNCSQPENKNLSNHAPCLEKNTKCNHCSVVIQPININNHAQINISIKNSNVKNNQIPPKTTDALTSGNHEKEKKNQKTRQCPFCLKEFRAASSYYYHLKYVHKDIKEHECEVCGRKFNTRSCLTRHMAIHAAQREFECQQCQKQFKTRASLYMHEQTHSGKKPWSCSQCKMSFRWNTQLLKHRKRHAAEKGHVCDTCGRGFSVRSDLLRHARTHSAGTIPCDKCGQKFAQLRYLKVHTAKQHSTNVRRKVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01247369;
- 90% Identity
- iTF_01247369;
- 80% Identity
- -