Achi009318.1
Basic Information
- Insect
- Antitype chi
- Gene Symbol
- -
- Assembly
- GCA_947359405.1
- Location
- OX375807.1:20393761-20407681[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-10 3.3e-07 30.3 0.0 2 41 117 155 116 159 0.87 2 2 9.6 4.2e+03 -2.0 0.1 14 22 239 247 230 247 0.70
Sequence Information
- Coding Sequence
- ATGACAAGACAGACTTCATCGGCTTTGATAACTATTAAGAAGATCAATTGTTACCGATGTATGAAACTAGGACGCACGAAGAAGAATTGCCCTAAGAATGCTGCTTCTACGCCTCAAGTGAGTAATGTGATGGACAAGAAGAAGGTATTATTGTCAGATTCTATAGGGAATAGCGGTGGAACTGGTGTTGGAGTGCAACCTCAATGCATGGTGTCACAGGAACAGTTCAGTTCGAACAGTTCCAGGAAACACGAAAAAAGATGCGAGGTCATAGACGAATCTTTCTTTGATGATAATATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGAGAATGGACAGAAAGAGCATTAATTGATGCTTTTCAAGCTTTTTCTAATGGAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCTAAAACTACATTTAAACGAAGACTTGCAAAAAATTATTTGACTAAAAGCGATGTTCTCGGTCCCAGTGGTATACTGCTGCCTGAAAATGAGAAGAAGATCGTCGTACACATTAAAAAATTACAGAAAAGTGGGTTTACGCCATCAAGAGAAACAGTGCGTAAAATGGCATATAATTTAGCGGAAAGACTTCATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGGAAATGGGTGGTTACAAAGCTTTCTTAGACGAAACAATGAACTTTCAATCCGGCAGTCAGAAGGTGTCTCTGTGGCCAGGGCTAAGGGGATGAATAAAGAATATGTTGAACGCAAAGGGCTACAATTGAACACGCTTGTGTTCAACAACGTCATGACTGTGTGCTGGCAAAGAGCCAATAATGCCACTGAACAACGCCGCGATGTACCAGAACCGAACAACCAACAACCTGGTGATATGGTTGTGGAACCTGAACATCAGCAATAA
- Protein Sequence
- MTRQTSSALITIKKINCYRCMKLGRTKKNCPKNAASTPQVSNVMDKKKVLLSDSIGNSGGTGVGVQPQCMVSQEQFSSNSSRKHEKRCEVIDESFFDDNMPLTYKRKSGVCRGEWTERALIDAFQAFSNGMGINEAAKTFGIPKTTFKRRLAKNYLTKSDVLGPSGILLPENEKKIVVHIKKLQKSGFTPSRETVRKMAYNLAERLHIKHNFNHEKKMAGNGWLQSFLRRNNELSIRQSEGVSVARAKGMNKEYVERKGLQLNTLVFNNVMTVCWQRANNATEQRRDVPEPNNQQPGDMVVEPEHQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -