Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388285.1:1885312-1888734[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.011 0.53 11.0 1.3 1 23 146 168 146 168 0.96

2 14 0.87 43 5.0 0.5 3 23 237 258 236 258 0.96

3 14 0.02 0.99 10.1 1.2 3 23 266 286 265 286 0.93

4 14 0.1 5 7.9 2.1 2 23 292 313 291 313 0.93

5 14 0.012 0.6 10.8 0.3 2 23 318 340 317 340 0.96

6 14 0.0038 0.19 12.4 0.9 2 23 347 369 346 369 0.95

7 14 0.083 4.1 8.2 0.4 1 19 416 434 416 439 0.89

8 14 1.3 65 4.4 0.7 2 23 511 533 510 533 0.92

9 14 0.081 4 8.2 0.1 1 23 537 560 537 560 0.95

10 14 3.6e-06 0.00018 21.9 0.7 2 23 564 586 563 586 0.96

11 14 2.8 1.4e+02 3.4 0.3 2 23 592 614 591 614 0.89

12 14 0.00047 0.023 15.2 1.8 3 23 623 644 621 644 0.94

13 14 0.13 6.6 7.5 0.0 2 20 651 669 650 672 0.95

14 14 0.0008 0.04 14.5 0.5 5 21 680 696 670 697 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.011	0.53	11.0	1.3	1	23	146	168	146	168	0.96
2	14	0.87	43	5.0	0.5	3	23	237	258	236	258	0.96
3	14	0.02	0.99	10.1	1.2	3	23	266	286	265	286	0.93
4	14	0.1	5	7.9	2.1	2	23	292	313	291	313	0.93
5	14	0.012	0.6	10.8	0.3	2	23	318	340	317	340	0.96
6	14	0.0038	0.19	12.4	0.9	2	23	347	369	346	369	0.95
7	14	0.083	4.1	8.2	0.4	1	19	416	434	416	439	0.89
8	14	1.3	65	4.4	0.7	2	23	511	533	510	533	0.92
9	14	0.081	4	8.2	0.1	1	23	537	560	537	560	0.95
10	14	3.6e-06	0.00018	21.9	0.7	2	23	564	586	563	586	0.96
11	14	2.8	1.4e+02	3.4	0.3	2	23	592	614	591	614	0.89
12	14	0.00047	0.023	15.2	1.8	3	23	623	644	621	644	0.94
13	14	0.13	6.6	7.5	0.0	2	20	651	669	650	672	0.95
14	14	0.0008	0.04	14.5	0.5	5	21	680	696	670	697	0.87

Sequence Information

Coding Sequence: ATGCTGAGATGGAACATATTTGGCGCACAACCACACAGAGGACTAGAACTGATATATAACGACACTTCAGAATGGGCTTACAAGCAAGAAACTCTCACAGAATCTACAGAGTACAAGAAAGAAATAATCACAGAATCAGACAGTGATTCAGATAGTCTGAGCGATGCAAGGGAACCGTCAGGAAATCTAGAAAAACTGAGAACAAACACTTCAGAATCAGCTTTCAAGCAAGAAACTCTTTCAGAATCTACAGAGTACAAGAAAGAAGTACTCACAGAATCCACTGAGAACACAAGAGAAATCATATCAGACAGTGATACAGATTATCTGAGCGATGCAAAGGAACCGTCAGAAGATCAAGAAAAAATGAGAACAAACGTCAAGAATGTGGTCCAAGCGTCGTCTGTCATGCCTTTTCGATGGCTCGTCTCCGCATACAGATGCTTCTATTGCTACGATGTCTTTCGCTATCCAGACGAACTCAAATCCCATAACATGCTCCACAACGACACTGAAATCGTAAACGCTATAAGCAAATTCTGGGAATCGACAGTTTATATTGATGTTTCTGATCTAAACTGTAAAATTTGCTGTGCAACTTTGACCTGTATAGACAGCTTAGTTGATCATCTGATGACAGAGCATAACGTACCTTACAATAAAGACGTTATTAGCTTCCAGTCTTTCAAGTTAGGTGAGAAAGTTGCATGCACGGTATGCAACTTGGAGTGTGATGATTTTGTGAAGTTACTCGTTCATACAAATTCGGAGCATCAGCGGAGCGAGGACCGACTTTGCGATGTTTGCGGTAGAACCTTCAAACCACATCAGTTTAGAATGCATCTAGCTAACGAGCATAGGAGTAAGATCGTGAAGTGTAAAGAATGCAATAAAGACTTTAGCGTGCACACAATAAGGACGCATATGACTCGTGCGCACAACAAGCTGTTGAAATGCCAGATGTGTTCGGAGACTTTTGAGACGGCTTACAAACGCGCCGCGCATCTCACTACCGTGCATAAAGGGAGGGAACCGGTTAAGTGTCCGCAATGTCCGAACACGTACTACTTTAAGAGCACAATGAGGAGGCATGTCAAGCAGGTCCATGTGAAGGAGAAGAACGTTGAATGTAAACTGTGCGATTGGAAGGAGTTGGCCTTGAAGAATGAACAGCAACTAGCAGCTTTGCTTATAACTATAATTCAGCACTCAACGATCTTACCCTTCCGATGGCATATGGGTAGATTTATGTGCTTTTACTGTCCATCAACCTTCAATAACGTCGCTGCTTTAAAAGACCACGATAGACAAGGCCATGACGAGATCAATATCACAGATATTGTGACACAAGTTACATATAACGATCGCAGTATAAAACTTGATGTTGCCACAGCGACATGCAGCCAGTGCGATGATGAAATCACTGATATCCCAGACTTCATCGAACACCTCTGGGAGAAACACGACACGGAATACGACCCGGACGTTGCGAAACACTTCATTTCCTACCGACTCGCCGACGGTGACATGAGCTGCGTCGAATGCGGCCTACACTTCCAATACTTCGGACGCTTGCTGATGCACACGAACCAAGCGCACACGAACAAGCACATATGCGAGATATGCGGGCAAGGGGTCGTCGGGAAAATTAACATTTACAACCACATGAAGCAAATGCACGCGATTAAAGAATGTAAATACTGCGGCGAGACTTTCCGCACGCAGTATGCGTTGTTCCAACACGTCTCAACGGAACACAAGGCTGAGAGATTGAAGTGCGCCGTTTGCGGGGAGTTACAACAGAATAGGTACAAAATGAAAAGACATATGGCCCTGGTGCACGATTGCAAGAACTTGCAGATAATCTGTGAATACTGCCATAAGGTTTTCACGAGGAACAATAAGTATGTGCAGCATAAAGAACGCGTGCATTTGAAGCAGAGGAATATAACGTGTGACGTTTGCGGGTTCGGTGTTTATGACGCGGCTGCGTTGAAGCTTCATATGGTGTGTCATGGCGATATGAAATACTTTTGTCTGTGCGGGAAGGCGTTTCGGAGATCTACTAATCTACTTGCGCACCAAAATCATTGTGGCTTACTCGTAGCGGAATCTGAGGGCAGGGAAATGCCCGCGCCAAATGTAGCAAGCAAAGTACAGGGGTCCTAA
Protein Sequence: MLRWNIFGAQPHRGLELIYNDTSEWAYKQETLTESTEYKKEIITESDSDSDSLSDAREPSGNLEKLRTNTSESAFKQETLSESTEYKKEVLTESTENTREIISDSDTDYLSDAKEPSEDQEKMRTNVKNVVQASSVMPFRWLVSAYRCFYCYDVFRYPDELKSHNMLHNDTEIVNAISKFWESTVYIDVSDLNCKICCATLTCIDSLVDHLMTEHNVPYNKDVISFQSFKLGEKVACTVCNLECDDFVKLLVHTNSEHQRSEDRLCDVCGRTFKPHQFRMHLANEHRSKIVKCKECNKDFSVHTIRTHMTRAHNKLLKCQMCSETFETAYKRAAHLTTVHKGREPVKCPQCPNTYYFKSTMRRHVKQVHVKEKNVECKLCDWKELALKNEQQLAALLITIIQHSTILPFRWHMGRFMCFYCPSTFNNVAALKDHDRQGHDEINITDIVTQVTYNDRSIKLDVATATCSQCDDEITDIPDFIEHLWEKHDTEYDPDVAKHFISYRLADGDMSCVECGLHFQYFGRLLMHTNQAHTNKHICEICGQGVVGKINIYNHMKQMHAIKECKYCGETFRTQYALFQHVSTEHKAERLKCAVCGELQQNRYKMKRHMALVHDCKNLQIICEYCHKVFTRNNKYVQHKERVHLKQRNITCDVCGFGVYDAAALKLHMVCHGDMKYFCLCGKAFRRSTNLLAHQNHCGLLVAESEGREMPAPNVASKVQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -