Ader018012.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- ZEB2
- Assembly
- GCA_947579855.1
- Location
- OX388285.1:4637585-4639844[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.6e-05 0.0048 17.4 2.3 2 21 157 176 156 177 0.94 2 9 5.1 2.5e+02 2.6 1.1 3 23 185 205 184 205 0.77 3 9 0.00012 0.0062 17.1 0.3 2 23 239 260 238 260 0.97 4 9 0.021 1 10.1 3.8 2 22 264 284 264 284 0.94 5 9 0.00049 0.025 15.2 0.5 2 23 322 344 321 344 0.94 6 9 0.013 0.66 10.7 0.3 3 23 352 371 351 371 0.94 7 9 0.0086 0.43 11.3 0.2 1 23 376 398 376 398 0.98 8 9 0.00034 0.017 15.7 4.3 1 23 404 427 404 427 0.98 9 9 0.0019 0.093 13.4 1.1 1 23 436 459 436 459 0.97
Sequence Information
- Coding Sequence
- ATGAACCGGCAAGTGGACATAAAATCCTTAGTATCTCATATCGTGAGAGGGGACGGCATGAATAAATGTAGAATATGCATGGGAGATACATCGCAAGGGCAAGTTCACCTCACCGACACGGTTATGATGGATGGAGACAAGGCCGTGACTCTATCAGAGCTTCTCGAAGTCATAACGGGAGTCGAGGTGGAGTGCGAAGAAGCCCTACCCTCGGCCATATGCCTCACCTGCTCCAATTCTGCATCTGAGGCCTCTGCTTTCCGGACCCTCGTGGAAAGTACCCAGCACCGATGGACCAGCACGGTCCAACTATTAGAGCACATCCCCAACCATGAATACAACCAATTCAGCGAAACGATCTTAGCCGTTCTATCCAACAATATTATCAACATAACTGATGTAAACACAAAACCTGTTGAAAAATCAAAAGAAGGGATCATCAAGAGATTTGGAAAAGTACAGGACTGTCAATGTCCTATATGCGATAAAAAGTTCCAATACGCATCACTCTTGCATAAGCATTTAAAAGAATCAGCGGACCTGATTAGAGCATGCCACATCTGCGCTTCAGTAATGAACAGGGAGCAACTGGTGAAACATCTGAAAAAATCTCATAACATAAAACCGCATGACTGTAAAAAATGTCCAGCTCTGTTTCTTAATGTGAAACCGTACTTGGAGCATTTGGTAAAAGCTCATGCGCCCGGGGCAATGACATGCGGAGACTGCAGCCGATCCTTCAAGAACCTGCCTGCCTTCCGAGCACACCAATCCGTACACTCAAGAAGATCCTGTCCAAACTGCGATAAACAATTCCAGAATCAGATGTGCTATACCCATCATGTTAGAAAATGCTGTAAATTAAACTACATAGACAGTAAACCAACCAAAACAGTCACTTTACAAAACAAGGAAAATAAGTTGGTCAAGATGGGGAATCGTGGTAGCACAAACAATAAATGCATCTGTGATTACTGCAACAAAACATTCTCCGCAAAGAAATATGTGGCTGCTCACATTGAGATAGTACACACCAAAACCACCCATAGACCCTGTGCTTACTGCGGCAAGATATTTGCCTCAGCTCACATGTCCACTCACGTGAGAATGCATAAAAACAACAGATATGAGTGCGAGCAATGCGGGGCTATTCTCAAATCAAAACTAGGTTTCAGCCAGCACCTGCGACTCCACTCAGGAGAACGGCCCTATAGATGTGAACACTGCGGGCAAACATTCTCATCGTCTTCGAGGCGATCTTACCATATACAAACTAAGCACTTTAAGTCGCAGATTGTTTTGAGACATGAATGCACTTTGTGTCCAGCTAAGTTCAACCTCCCCTTTAAGCTAAGGCTGCATATGCAGAAAGTTCACAAACATAAAGACGAGGCTGTGCCTGAATGTGAAAAAAGCCCTAAAAAGATGGAAATCTGA
- Protein Sequence
- MNRQVDIKSLVSHIVRGDGMNKCRICMGDTSQGQVHLTDTVMMDGDKAVTLSELLEVITGVEVECEEALPSAICLTCSNSASEASAFRTLVESTQHRWTSTVQLLEHIPNHEYNQFSETILAVLSNNIINITDVNTKPVEKSKEGIIKRFGKVQDCQCPICDKKFQYASLLHKHLKESADLIRACHICASVMNREQLVKHLKKSHNIKPHDCKKCPALFLNVKPYLEHLVKAHAPGAMTCGDCSRSFKNLPAFRAHQSVHSRRSCPNCDKQFQNQMCYTHHVRKCCKLNYIDSKPTKTVTLQNKENKLVKMGNRGSTNNKCICDYCNKTFSAKKYVAAHIEIVHTKTTHRPCAYCGKIFASAHMSTHVRMHKNNRYECEQCGAILKSKLGFSQHLRLHSGERPYRCEHCGQTFSSSSRRSYHIQTKHFKSQIVLRHECTLCPAKFNLPFKLRLHMQKVHKHKDEAVPECEKSPKKMEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -