Ader014778.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388272.1:10909751-10918912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00078 0.039 14.5 0.8 1 23 617 640 617 640 0.92 2 11 0.022 1.1 10.0 1.6 1 19 655 673 655 677 0.92 3 11 0.00011 0.0057 17.2 1.4 2 23 683 704 682 704 0.96 4 11 9.2e-05 0.0046 17.5 0.6 1 23 708 731 708 731 0.97 5 11 0.0013 0.066 13.8 0.3 2 23 915 936 914 936 0.95 6 11 0.11 5.7 7.7 0.4 2 23 956 978 955 978 0.96 7 11 1.8e-06 9.1e-05 22.8 4.1 1 23 984 1006 984 1006 0.98 8 11 0.035 1.8 9.3 4.3 2 23 1012 1033 1011 1033 0.95 9 11 0.015 0.76 10.5 3.2 2 21 1040 1059 1039 1062 0.94 10 11 1.9 95 3.9 0.4 1 19 1070 1088 1070 1089 0.87 11 11 0.73 36 5.2 1.8 3 19 1102 1118 1101 1123 0.92
Sequence Information
- Coding Sequence
- ATGGACTCGGGGAATGTCGTTATCGACTCCGACATGGCATATCCGATCCTGTTCATCCCCAAGAAGTGCACAACACTTGAAACCAACTGCGAATTGACGGATAATGTGTACATCGACGTGAGCATTACCTCCCCGGACTCAGAAGGCAACAATACCAATATTTATAACGGCTTCTGTAACATAAAACTGGTAGATTCCTATGATGTGAACTTGACTCAAGTGGAGTCCCCTGATAGTTCATCAGGGGAACCTGATATTGATCAGATGCCAGTTATTCTGTCATCTGAGGCCAACCAGTTGTTTCCACCGTACACCCAATCGCAGGTCTGGATAGATCCATATAGAAGTCCATATGTCTACAATCACTATGATCCAGCCGTCCAAGAGCAGTATTCGATCCGTGAGTCCGGAGGACTGATCACAGTGGAACAACACAACACATACATAACTCAGAATGTGTACAACTGTAAGGAATCCAATGTATATAACTATAAAGAGGCACCGCAGTCCCCGGTCAAGGATTTTGAGTGTAAACGGCCCAGGAAAGTGCAGGAGATGGTCGGAACGTCTCAGCCGGACACAAACATGGGTTATTATGAGGATGATGAGTTTGAGTGTCTGTCACAGTTGCCTGAGGAGATCATGAATGAGAAGCAGACAAGAGCTAGTTTGTGCGGATGTTTGTTATTCAATCATGCCGTATCATGTGGGCTGCCCACATACCACATATACACAGATGGAGCCAAACAGAAAACGGGGGTGGGCTGTGGCTTTTACTGCCCTGAAACAGGACTATGTAAGGCTCAGCCACTCAACACAACCACCACGGCTTTCCAAGCCGAAACTATAGGTCTACATCTGGCGGCCAAAGATATACTGACATCATTAAAGTCTGTGCCGGAAACAGGGAAAGCTCTAGCATGCACACAACAACTTATCTTCACAACAGATAGTGCAGCACTTATAAATGCTCTTCAAAGACCAGACACCAGATCCAAATCGATACTGGAATGTCATAATGCACTCCAACAACTAAGTGTGAATCATAGAGTGCTCATCAAATGGACAAAGAGCCATAGCACAAACCTTGGCAACAACAGGGCTGACGTCCTGGCAAAAGAAGGAGCAAAACTTGTTCCTACAGAAGCGGACAAGAGCCTATCAAATCCACCAACGGCGGAAATCAAAAACAGACTAAGAGAACACTTTGAAAAAGAGCACCAGAAGCTCTGGGAAAGCAGAAAGGACTGTAAGCAGGCGAAAGTCATGCTCCCGGGCCCAGACAAGAAGTCCACCAACACCATAATAAAGATGAAACGCGAGGACCTGCGAATGTTGGTGGGCATCATCACAAGTCACTGTGAATTAAACCATCACCTGTACAAGACAGGGGCTACTGACAGCGGATTATGTCGGGGCTGCCTACAGGGAGAAGAAACAGTAGAGCACGTAATTTTGCACTGTACAGCCACGGAAGAGGCCAGGACCACATCGGGTCTGCGGGCCGTGCTCGGAAGCGGCTCCCAGACACCGCTGCATACAGGGATACTGCGAGAATGTTACCAACGACCCAAAGTCCTGCTTCGCTATTTTAAGGAGCTGGGCTGGCTGGGGGAGGAGAGGAAGTTCCCAGCGCAGGACAACGGTGCACTGAAACAGCTGATGTCATCCGACATCCAGTCTACATCGAAGCAGAGGAAGACCATTCTCTTCCTCGGCCATGACTCCCATTCCGGGCAGACCATACAGAACATATCTTACAACGACCCGTTGGTGAAGTGTGCTGACATGGAAGtggctagtgaagttgtcattgACACTTCATCACCTAACCCAAAGAAGAAGAAATACCAGTGCGATAAATGTAAACAGATCTTCGACCAGATATCCTCATTCCGCCAGCACATGGTCGGAAACCACACCAACTACAAACTATCCACGCAACCGGACAAGGAGCTCAGCTTCATGTGCGCCGACTGCGGGAAGAGTCTCAAGAACCAGCGCAAATTCGAAATACATTGCCTCGGGCACGGGGACCCCGACTTAGAATGCTCAAAGTGTAGGAAAGTGTTCGCGTCAAAATTCTCCCTCAGGGTCCATAAAAAAATCCACAGCAGAAAATATCCGTGCAACTACTGTATAAAATCCTACACCAGCAACGAAGAACTCAAAACACATATGGAAAAGATACATTTTCTATACATGTGTGATGATGAAAATTGTTCTTTTGTTAGCGGGAAGCCGTCGGACTTGGAAGGCCATCAGCACTGGCAAAGGCCCTCTGAGGAACCAGATATTGACCACCCAGAAGACACTGATATAACAGAACTGAAATCCGAAGTCGAAATACTTGGTCAGGACTTAATAAGTTCGAGCCTATCACAGTCAAAACAATACCTAACACAGCCAAACCAAGAACTATCACAGTCAAATCAAGACCTATCACAGTCAAATCAAGACCTATCACAGTCAAATCAAGACCAATCTATGTCGAACCAAGATCTGTCGTTGTTGAGCTCAAATCGTAACGTGTCGGGTTCGAACCAGGACTTGTCGAGGTCAAGTCATGACCGCATGAGGTCAAGTGTGGACTTGGCGAGGTCACACGAGGATTTGACGCCGTCGGTGGAGGATAATGAAGGTGAACGGATAAGAAAGGCAGATTCTGTGATCGCTAAAGTGATATCTAACAAGATATTTCTTCTAAGCTCTAAAAAGGCCAGGAGGCGTCGATTTCGTAAGACTTGCGCAGTTTGCCTCAAAACGTTCGATCGAATCGACGATCTCAAACGGCACCTTATAGAGCACGTCATAAAGTCTACTTTGGCGAAGACTCCCGTCACTCGAACGGGCAGCTTGAACATCACTTGTGAGATCTGCCAAACAGAAACGTTCAGCAAAGTGGACAAGTACAAGGCGCACCTGCGCGAGCACGCCAAACTAACCATCTACAAGTGCACCTTCTGCGACAAGTCCTTCAGCGACTCCAGCAACTTCTCTAAGCACAAGAAAATCCACGGCGTCGCCTATCTCCAGTGCGACCTCTGCCACCGCAAGTTCAACTCCAAGAAGATGATAGCACAGCACATGGACCACCACAACAAAACCTCGCCTGTCCAATGCACCTACTGCAATAGAGTGTTCCACTTCGTCTCCATGCTGAACAAACACGTCCGTTGCGCCCACCGCAAGGAGGAATGCTCGAAGTTCCGCTGCAGATTCTGCGAGGAAATCTTCCGGACGCTGAAGGAGAAGTGGGACCACGAATGGAACGTTCACAATGTTAGGAAGATGATAGTGGACTGCCTGGTCTGCGGCTCCCAGTACAGGAAGTATTCAGAGCTGAAGCGGCACTGCCAGGATGAACATGAGATGGACATACCTCCGGCTAAGAAGCTTTTGAAAAAGAGGTATACGAGGAAGCTCTCTTTTGATTGA
- Protein Sequence
- MDSGNVVIDSDMAYPILFIPKKCTTLETNCELTDNVYIDVSITSPDSEGNNTNIYNGFCNIKLVDSYDVNLTQVESPDSSSGEPDIDQMPVILSSEANQLFPPYTQSQVWIDPYRSPYVYNHYDPAVQEQYSIRESGGLITVEQHNTYITQNVYNCKESNVYNYKEAPQSPVKDFECKRPRKVQEMVGTSQPDTNMGYYEDDEFECLSQLPEEIMNEKQTRASLCGCLLFNHAVSCGLPTYHIYTDGAKQKTGVGCGFYCPETGLCKAQPLNTTTTAFQAETIGLHLAAKDILTSLKSVPETGKALACTQQLIFTTDSAALINALQRPDTRSKSILECHNALQQLSVNHRVLIKWTKSHSTNLGNNRADVLAKEGAKLVPTEADKSLSNPPTAEIKNRLREHFEKEHQKLWESRKDCKQAKVMLPGPDKKSTNTIIKMKREDLRMLVGIITSHCELNHHLYKTGATDSGLCRGCLQGEETVEHVILHCTATEEARTTSGLRAVLGSGSQTPLHTGILRECYQRPKVLLRYFKELGWLGEERKFPAQDNGALKQLMSSDIQSTSKQRKTILFLGHDSHSGQTIQNISYNDPLVKCADMEVASEVVIDTSSPNPKKKKYQCDKCKQIFDQISSFRQHMVGNHTNYKLSTQPDKELSFMCADCGKSLKNQRKFEIHCLGHGDPDLECSKCRKVFASKFSLRVHKKIHSRKYPCNYCIKSYTSNEELKTHMEKIHFLYMCDDENCSFVSGKPSDLEGHQHWQRPSEEPDIDHPEDTDITELKSEVEILGQDLISSSLSQSKQYLTQPNQELSQSNQDLSQSNQDLSQSNQDQSMSNQDLSLLSSNRNVSGSNQDLSRSSHDRMRSSVDLARSHEDLTPSVEDNEGERIRKADSVIAKVISNKIFLLSSKKARRRRFRKTCAVCLKTFDRIDDLKRHLIEHVIKSTLAKTPVTRTGSLNITCEICQTETFSKVDKYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGVAYLQCDLCHRKFNSKKMIAQHMDHHNKTSPVQCTYCNRVFHFVSMLNKHVRCAHRKEECSKFRCRFCEEIFRTLKEKWDHEWNVHNVRKMIVDCLVCGSQYRKYSELKRHCQDEHEMDIPPAKKLLKKRYTRKLSFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -