Ader017793.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388285.1:2195395-2208512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.25 13 6.7 0.0 3 23 302 323 300 323 0.93 2 14 0.0032 0.16 12.6 0.2 1 23 345 367 345 367 0.97 3 14 0.0037 0.18 12.4 0.4 1 23 371 394 371 394 0.98 4 14 0.44 22 5.9 0.8 3 22 401 420 400 420 0.96 5 14 0.022 1.1 10.0 2.2 1 23 457 479 457 480 0.95 6 14 3.6e-05 0.0018 18.7 2.1 2 23 486 507 486 507 0.97 7 14 0.65 32 5.4 0.1 3 23 549 570 548 570 0.97 8 14 5.6 2.8e+02 2.4 0.0 3 23 597 618 595 618 0.93 9 14 0.0012 0.06 14.0 0.3 1 23 640 662 640 662 0.97 10 14 0.0028 0.14 12.8 0.6 1 23 666 689 666 689 0.97 11 14 0.41 20 6.0 0.8 2 22 695 715 694 715 0.95 12 14 0.024 1.2 9.9 0.6 1 23 722 745 722 745 0.98 13 14 0.28 14 6.5 0.6 1 23 752 775 752 775 0.92 14 14 0.0006 0.03 14.9 2.1 2 23 781 802 781 802 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGCAAAGCGTCTGACTGGAGGCCCGGCCCCACAGTATGCCGCTGTTGCCTCACTGAAGGATGCTACAAGGATATTTCTACCGAATACTTCTGGATGGGAAAGCGGGAGGTGTACGCCGAAATGCTTTCAGAGACCCTCAATGTATCTATTGCCTACTCCCAATCCGGAGGCCCCAACAGCAACAGTCGTCTGATCTGCGAGCCATGCATCTCACGTCTGCGCGATGCCTCCGAGTTCAAGCGTCAGGTCATCGACTGTGAGAAGACCTTCATGCACCATCTAGACCCGGGGAGCTCGAGCAAATCCCGAGAATTCACGGTCGATTCAATCGGCGAGGTGAAGGTGGAAGTGGTGAAGCGAGAAAAGGAGAGCCTCAGCGATGATGACTTTGATGATCGGCCCGACTTCCTTGATGTTGACACTGATGATGACCTTGACGACCAGCCACTAACAAAGTTGGCCAGCAAGATGCCAAGCAAGGTCCCCAAAAAAGAGGTCGACCTACTCGACCTCTTGGACTCCTCGCAGATAACCGTCAAGCGGAAATCGAACTTGAAACTGAAGGCACCTCCCAAAAAGGTTGTTAAGAAAAAGGAGGTTGTCAAACCCGCGGCCGTGAAGGTCGCAACACCAAGCAAGCAAGTCGAGAAGAAAAAAGCGGAAAACGATCTGACTCGCAGTAACGCAGAGGCAATACTGCGCTGGACGACCGCTTTCCCGTTCAGAGTGAACATCGAGAACAAATCGATACTGTGCGTCTATTGTCAGGAGCTGTATGACGACCCGGCGGTATTTAGAAGCCACTCGCTTCAGGACCACGATACATGTATAATGGAAGTTGTGTGTCGCAACCTTCCGAAGTCAGAATTCATTAAAGCGGACCTCACGGATCTCGCGTGCAAACTCTGCGACGCAAAATTCCAGGACTTGGAAACGGTCGCAGCGCACTTAGCCTCTCAACACGATAAAAGTATCGATTTCGGCTCGAAACTCGGCGTCATGCCGTACAAACTGAAAAAGGACTCGTTTATCTGCGCGGTTTGCGGCAAAATCCTACCGTCCCTGCTCCATCTGAACAGGCACACCATATCGCACTTCCTCAGCTACGTTTGCCACGTTTGCGGCAGTAGCTACATCGCGTCGACCGGCCTCTTGAACCACGTGCGATCGAAACACCAGGAGTACCAGGTGGACTGCAAGCGCTGTCGTACCACATTCCCCAGTATGGAGGCTAAGGAGCGCCACAGACGCACAGTTAAAAGCTGCATGCCGTACTCCTGCCCACTCTGCGCGGAGAGATTCCTAGAAGGGACAACGAGACAGAAGCATTTAGAAAGCCAACACGGGTACGCTAAGAAAACCTACCGCTGCGCTGATTGTAACGTTGATTTTACGAGTCGCGTCGCGTATTACAATCATTTCAAGCTGCACCATTCTGATAACTGTGCTGTGTGCAAACACTGCGGAATGAAGTTTGTGTCCCTTTATCTCTTGAAGCGGCACCAAGCTAAGCATACCATCCACTACAAAGAGAATTTTTCTTTTTTAGCGGTAAACGATCCGACACGCAGTAACGCGGAGACGATACTGCGGTGCACGACCGCATGCCCGTTCAGAGTCAACGACAAGTCCATACTGTGCGTCTACTGTCAGGAGCTGTTCGACGACCCGCCCGTGTTCAGGGAGCACGTGCGGCGGGACCACGAGAACTGCACACTCGAAGTGGTCTTCTACAACCTGCCGAAATCAGAATTCATTAAGGCGGACCTCACCGACCTCGCTTGCAAACTCTGCGCCGCAAACTTTCAAGATCTGGATGCGGTCGCCGCGCATTTAGCCTCTGAGCACAATAAGAATATCGATTTCAACACAAAACTAGGAGTCATGCCGTACAAACTGAAAAAGGATGTGTTCAACTGCGCGGTTTGCGGCAAGGTGCTTCCGTCTCTGCTCCATCTAAACAGGCATACGATATCGCACTTCCTAAGCTTCGTATGCCACGTTTGCGGCAGCAGCTACATCGCTTCCACTGGTCTCTTGAAGCACGTGCGTTCTAAACACCAGGACTATGAGGTGTATTGCAAGCGTTGTCGCACCAAATTCCCGAATATGGAGGCGAAGGAACGCCACAGACGCACAGTGAAAACCTGCATGCCGTACTCCTGCCCGCAGTGCGCAGAGAGATTCCTCGACTGGAAAACGAGACAGAAGCATATGGAGACTCAGCATGGGCATGCCAAGAAAACCTACCGTTGCGCTGATTGCAACGTAGACTTCACCAGTGATATCGCTTATTACAATCATTTCAAGCTGCAGCATTCTGATAACTGTGCTGTGTGCAAGCACTGTGGGATGAAGTTTGTGTCTGTTTATCGTTTGAAGCGGCATCTCGCTAAGCATAATATGTAG
- Protein Sequence
- MEGKASDWRPGPTVCRCCLTEGCYKDISTEYFWMGKREVYAEMLSETLNVSIAYSQSGGPNSNSRLICEPCISRLRDASEFKRQVIDCEKTFMHHLDPGSSSKSREFTVDSIGEVKVEVVKREKESLSDDDFDDRPDFLDVDTDDDLDDQPLTKLASKMPSKVPKKEVDLLDLLDSSQITVKRKSNLKLKAPPKKVVKKKEVVKPAAVKVATPSKQVEKKKAENDLTRSNAEAILRWTTAFPFRVNIENKSILCVYCQELYDDPAVFRSHSLQDHDTCIMEVVCRNLPKSEFIKADLTDLACKLCDAKFQDLETVAAHLASQHDKSIDFGSKLGVMPYKLKKDSFICAVCGKILPSLLHLNRHTISHFLSYVCHVCGSSYIASTGLLNHVRSKHQEYQVDCKRCRTTFPSMEAKERHRRTVKSCMPYSCPLCAERFLEGTTRQKHLESQHGYAKKTYRCADCNVDFTSRVAYYNHFKLHHSDNCAVCKHCGMKFVSLYLLKRHQAKHTIHYKENFSFLAVNDPTRSNAETILRCTTACPFRVNDKSILCVYCQELFDDPPVFREHVRRDHENCTLEVVFYNLPKSEFIKADLTDLACKLCAANFQDLDAVAAHLASEHNKNIDFNTKLGVMPYKLKKDVFNCAVCGKVLPSLLHLNRHTISHFLSFVCHVCGSSYIASTGLLKHVRSKHQDYEVYCKRCRTKFPNMEAKERHRRTVKTCMPYSCPQCAERFLDWKTRQKHMETQHGHAKKTYRCADCNVDFTSDIAYYNHFKLQHSDNCAVCKHCGMKFVSVYRLKRHLAKHNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -