Ader017740.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388285.1:1879490-1881917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.5 2.2e+02 2.7 3.9 1 23 54 77 54 77 0.91 2 10 0.0046 0.23 12.1 1.9 2 23 103 125 102 125 0.90 3 10 1.1 54 4.7 1.1 2 23 148 170 147 170 0.90 4 10 0.00012 0.0061 17.1 0.1 1 23 177 200 177 200 0.95 5 10 0.00038 0.019 15.5 1.9 2 23 206 228 205 228 0.96 6 10 0.0013 0.064 13.9 0.1 2 23 234 256 233 256 0.95 7 10 0.0028 0.14 12.8 0.9 1 23 263 286 263 286 0.96 8 10 0.016 0.8 10.4 0.8 3 23 294 314 292 314 0.93 9 10 1.8e-05 0.00088 19.7 2.8 1 23 320 342 320 342 0.99 10 10 4.7e-06 0.00024 21.5 1.3 3 23 350 370 348 371 0.95
Sequence Information
- Coding Sequence
- ATGTGGATTCAAATTGGTTCAAATTTCGAGGAGGCATCTCTCGTCAACTCAGTCATGGAGAAGATGACTGAACTGCAGCGTAAAGAAGATCTCGTCAGTCTCATGTCCACTATAATAGAGAACTCTACCGCAGTGCCGTTCCGCTGGCACTGCAGCAAGTTCGCCTGCTTCTTCTGCTGCTACCCGTTCGAAGAGAGCTCCAAGCTTAAAGCGCACTATCACGAAGAGCACAGCGATGCGAAAATCAGGAGCGCGTTCCGCGGCGTCATCAAGAACAGCAAGGTGAAGCTCGAAATCTCGGACCTGACCTGCAAGAAGTGCTCGAAATGCTTCAACGTTCTCGACGAACTGCTCGAGCACTTTGTGAAGATCCACGGGCTGAAGCTGAACCTTGAAGTGAAGCACCAGATCTTCGCGTACAAACTCGCGGATGACCGGATGCCGTGCCTGCAGTGCGGTGATGAATTCAGATTCTTCGGAACTCTACTAAAGCACACCCACGCGAAACACAACACCACCAACGAGGCGTTTCTCTGCGAGATTTGTGGCCAGGCTTTTGTCACCAAGACAAGCGTCGCCAGCCACGTTAAGACCGTCCACACGAACGATGGCGTCTCCTGCGACAAATGCAACATATCATTCAAGAACGTGAACGCACTACAGCTGCACCATCGCCGCACGCACCGCACTTACATGCTAAAGTGCCCGAAGTGCCCAGAGGTTCTGACCAGCCCGTACTTGAGGAAACGGCATCTGGCTAAGGTCCACGACGTGAAACGTTTCCAGTACGAGTGCGATCTCTGCAACTTCGTGTTTACTCTGAAGAGTCGGCTGCTGATGCACAAGTCCAGGGTCCATATGAAGGAGCGAGCGTTTGGCTGCGAGTTTTGCTCGTACAAAGCGTTCAACAAGGAGAGCCTCACGCGGCACATGGTTTCCCATGACGATTCGCGGCCGTTTCAGTGTGAGTTTTGCAAGAAAGCATTCCAGAGGAAGAAAACTCTGGAACTGCATAGGCGGATACATACAAACGATAGGAGGTACGGCTGCAAGGAGTGCGGGAAAGCGTTTGTTCAGTACACGAGTTTGAAGCTACATTATCGGGTGCATCATTCTAAAGACGGGCCGACTGCGGAGGCTCACGTCGCCAGTTACTGGTCGCCTAGACATTAG
- Protein Sequence
- MWIQIGSNFEEASLVNSVMEKMTELQRKEDLVSLMSTIIENSTAVPFRWHCSKFACFFCCYPFEESSKLKAHYHEEHSDAKIRSAFRGVIKNSKVKLEISDLTCKKCSKCFNVLDELLEHFVKIHGLKLNLEVKHQIFAYKLADDRMPCLQCGDEFRFFGTLLKHTHAKHNTTNEAFLCEICGQAFVTKTSVASHVKTVHTNDGVSCDKCNISFKNVNALQLHHRRTHRTYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDLCNFVFTLKSRLLMHKSRVHMKERAFGCEFCSYKAFNKESLTRHMVSHDDSRPFQCEFCKKAFQRKKTLELHRRIHTNDRRYGCKECGKAFVQYTSLKLHYRVHHSKDGPTAEAHVASYWSPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701390;
- 90% Identity
- iTF_00361971;
- 80% Identity
- -