Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388285.1:4634415-4637041[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.51 25 5.7 0.1 1 20 116 135 116 137 0.93

2 15 4.7e-05 0.0024 18.4 0.8 1 23 167 189 167 189 0.98

3 15 0.22 11 6.8 2.3 3 23 195 216 194 216 0.94

4 15 0.062 3.1 8.6 3.2 2 21 220 239 220 240 0.92

5 15 0.012 0.62 10.8 0.4 1 23 249 272 249 272 0.93

6 15 0.001 0.051 14.2 5.2 1 23 278 300 278 300 0.97

7 15 0.0006 0.03 14.9 1.4 1 23 307 331 307 331 0.97

8 15 0.00041 0.02 15.4 1.8 2 21 433 452 432 453 0.93

9 15 0.16 7.8 7.3 0.4 2 23 485 507 484 507 0.93

10 15 0.00081 0.04 14.5 0.3 2 23 513 534 512 534 0.95

11 15 0.25 13 6.7 4.2 1 20 537 556 537 558 0.93

12 15 0.00033 0.016 15.7 0.9 1 23 569 592 569 592 0.93

13 15 8.7e-06 0.00043 20.7 2.0 1 23 598 620 598 620 0.98

14 15 0.018 0.88 10.3 1.5 1 23 654 677 654 677 0.96

15 15 0.065 3.2 8.5 3.1 3 23 687 708 686 708 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.51	25	5.7	0.1	1	20	116	135	116	137	0.93
2	15	4.7e-05	0.0024	18.4	0.8	1	23	167	189	167	189	0.98
3	15	0.22	11	6.8	2.3	3	23	195	216	194	216	0.94
4	15	0.062	3.1	8.6	3.2	2	21	220	239	220	240	0.92
5	15	0.012	0.62	10.8	0.4	1	23	249	272	249	272	0.93
6	15	0.001	0.051	14.2	5.2	1	23	278	300	278	300	0.97
7	15	0.0006	0.03	14.9	1.4	1	23	307	331	307	331	0.97
8	15	0.00041	0.02	15.4	1.8	2	21	433	452	432	453	0.93
9	15	0.16	7.8	7.3	0.4	2	23	485	507	484	507	0.93
10	15	0.00081	0.04	14.5	0.3	2	23	513	534	512	534	0.95
11	15	0.25	13	6.7	4.2	1	20	537	556	537	558	0.93
12	15	0.00033	0.016	15.7	0.9	1	23	569	592	569	592	0.93
13	15	8.7e-06	0.00043	20.7	2.0	1	23	598	620	598	620	0.98
14	15	0.018	0.88	10.3	1.5	1	23	654	677	654	677	0.96
15	15	0.065	3.2	8.5	3.1	3	23	687	708	686	708	0.94

Sequence Information

Coding Sequence: ATGGACGACATGCCAGGGGGCTTGCCGCAACAACTGTGCCACTGCTGTATTTCTCACATCACAACCTTCCTGCCTTTCCTTAAGATGTGCCAGGAATCAGCCGCACGCTGGAGCTTCCTATCCGAGCGATTGCTCGATATCTCTGCTCATACTAATGCCAATACAGCTTTTATATTCGTCACTGACAATCACGCCCGAACCGTTGTCGAACGAAGGGATAGACAAAAGAATTTAAACATGAAGAACGTTCAAAATCGCGTGAATCGTCTTCGAGAAGAAAAGGTGTTAAAAACATTAAGAAATCCAGTACCTACAGAACTAGAAAGGAGAAGGAGAACGAGGCTTTACACCTGTGTAGAGTGCGGATCGGAGTACAGAAAGTTGTCTAAAATCAATCTTCATCTAGCTAACCAGAACAAGCAGCTTTGCAGGCACTGCAACAGGGTTGTCAGCCTTAAAACGTTTGGACAGCACCTGAAAATGCACATGATAACTTTCTTCAAATGCGATATTTGCTCCATAACTTTCGAGTCAGAGCAGCAGTTGGAAAAACACAAAAAAGTTCATAACGGAAAAAACATGTGCTTCGAATGCAAAAGGACCTTTCTTACCGCTGACATGCTAACGCTACACGTGCATAGAAGACACGAGGCAGCTGTCTGCTATACGTGTAACAAAAAATTCTCCAATCGCATCTGCCTGTACAATCACAGAAGCAAATGTAGATCTCAGACACAGAAAAAGTTTATCTGCGATTTCTGTTCCAAGGAGTTTAACGATAGAAGTGTGATCAAATCACACATAACATTAGTTCACTCAAAAAAGCTGATGCACCAGTGCGAACAGTGTGGAAAACAGTTCAATAGCGCCTGTCATTTAGAAGAACATAACGAGACCCACGACGTTATACAAGACAGATATGTGTGCCAGTACTGTGATAATAAAATCTATAGCAGCTCAGGAGGCTTCCGCAGACACATGAGACAGAAGCATTATAACGTCGAGGAAGACGCTATCCTCCCGCCGGGGCTGTGCCGCGCGTGCGCAGAAGACGTCGTCACAGCCGCCAAGTTCAAACACCTCTACGAGAAGTCCGCTTACCGATGGAGCGAGGCGGCCGCGTGCCTCTCCAAAATAAACTTTGAGAGCGAAGACAGAACACTATTCCTCATGTTCGAGGACAACGACATGGTTCTTTGCGAGAAGAAAGTCGATACAGTACAATCAGCGTTCACCACTTTGAAGCAGTTCAACAAAGTTGAGAAGCAAAAGAAGCCGCGGAGAGAATTCGCGTGCGCGTGCCCGTACTGCAACAAGCCATTCACATCCTTTGATCTTCTGAACGACCATCTGAAGCACGGACAGAAGAGAGTTTGCTGTGAATGTGGCTTAGTTCTTGCCAAATCTGGGATATCGAAGCACATGCTCGACGCACATCAAATAGAAACAGTGGAGTGCAAGATTTGTCACGAACTGTTTAGCAGTTATGGCGACGAAAACTGGCATATGATGCAATACCACGGTCCCAATTCTTTATCATGTAAGAACTGCGGGCGTGGCTATAAGAACGAGAGAGGGCTGAGGGCGCATTGGTATTCGCACTCGCTGTTCAATTGCGTGAGTTGCGGACAGAGCTTTGAGAATAACCGCTGCTACCGACACCACCGCACCAATTGCAAGTCCATGAAATCGGAGTTCAGCTACTACGAATGCCACGACTGCGGCTTGAGATACGACAAGAAACCCTCCCTCAAAATACACATCGTGCAAAAACACTTGAACGTGCTCCCGTTCGTCTGCACGACTTGCGGCAAACGTACCTCCACTTCAGCGCATCTGAGATCTCACGAGAGAGTTCACGATAAAGACAGAAAGACGGTAGTGTGTCACTGTGGGGCGAAATTCCGAACGGAGCTAGGGCATCGTCTCCACATGCGCACGCACAGCGGTATCAAGCCTTACAAATGCAGCCAATGCGAGGAGACCTTTATATCCGCGTCTCGCCGATTGGACCACACGAAAAGGAGGCACAAGAGCACGAAAGACTTAGCCCACGGGTGCGATCAATGCTCTGCGCGGTTCATACGGCCTTGCGAGCTGAAGAAGCACTACGCGCAGTGCCATCGCTTGGTTGTGTGCGTTCCACCGACTACGAGAACTAGAGAAAAACAGCAATCTAATGAGAATTTTTTACAGTGA
Protein Sequence: MDDMPGGLPQQLCHCCISHITTFLPFLKMCQESAARWSFLSERLLDISAHTNANTAFIFVTDNHARTVVERRDRQKNLNMKNVQNRVNRLREEKVLKTLRNPVPTELERRRRTRLYTCVECGSEYRKLSKINLHLANQNKQLCRHCNRVVSLKTFGQHLKMHMITFFKCDICSITFESEQQLEKHKKVHNGKNMCFECKRTFLTADMLTLHVHRRHEAAVCYTCNKKFSNRICLYNHRSKCRSQTQKKFICDFCSKEFNDRSVIKSHITLVHSKKLMHQCEQCGKQFNSACHLEEHNETHDVIQDRYVCQYCDNKIYSSSGGFRRHMRQKHYNVEEDAILPPGLCRACAEDVVTAAKFKHLYEKSAYRWSEAAACLSKINFESEDRTLFLMFEDNDMVLCEKKVDTVQSAFTTLKQFNKVEKQKKPRREFACACPYCNKPFTSFDLLNDHLKHGQKRVCCECGLVLAKSGISKHMLDAHQIETVECKICHELFSSYGDENWHMMQYHGPNSLSCKNCGRGYKNERGLRAHWYSHSLFNCVSCGQSFENNRCYRHHRTNCKSMKSEFSYYECHDCGLRYDKKPSLKIHIVQKHLNVLPFVCTTCGKRTSTSAHLRSHERVHDKDRKTVVCHCGAKFRTELGHRLHMRTHSGIKPYKCSQCEETFISASRRLDHTKRRHKSTKDLAHGCDQCSARFIRPCELKKHYAQCHRLVVCVPPTTRTREKQQSNENFLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -