Ader017166.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- ZNF639
- Assembly
- GCA_947579855.1
- Location
- OX388269.1:3989858-4000462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.71 10.6 4.7 1 23 276 298 276 299 0.95 2 12 0.054 2.7 8.7 0.1 1 23 305 328 305 328 0.94 3 12 0.041 2.1 9.1 2.0 1 23 332 354 332 354 0.98 4 12 0.00098 0.049 14.2 8.5 1 23 359 382 359 382 0.97 5 12 0.018 0.88 10.3 0.8 1 23 386 409 386 409 0.96 6 12 0.9 45 4.9 0.2 6 23 426 444 422 444 0.90 7 12 9.7e-05 0.0049 17.4 1.3 3 23 456 477 454 477 0.96 8 12 0.17 8.7 7.2 0.0 1 23 497 520 497 520 0.94 9 12 5.1e-05 0.0025 18.3 3.6 1 23 535 557 535 557 0.97 10 12 0.0014 0.071 13.7 1.0 1 23 563 585 563 585 0.92 11 12 6.7e-07 3.4e-05 24.2 2.3 3 23 592 612 591 612 0.97 12 12 0.0054 0.27 11.9 4.5 1 23 618 641 618 642 0.96
Sequence Information
- Coding Sequence
- ATGTCGAAAACTATATGCAGAATATGCTTGCGGACAGACATAAACACTCGTGATATTGACGAAACCCTGGTAGATTTTCACGATGAAATAACAGAATATGCGGGATATCCTAGTCATCTACACGAGTTGCTGGCACCATCATGGCTGGTTTGCAGTATTCCATCCACTTTTCAATTCACCATAAATAATGATAATTTAGAGCCATTGCTATCGACTGAGGAACTTTTTATCAAGCAAGAAAAAGCTGAAGATGAGCTTGGAAATGACTTAGAAAACAATGATATTTCAGAAGCCACAGATACTTTACAAACAAATAATGATATTCAAGAAAATTTTGTTTATACCGATGTTTCTGGCACCAATTATATTGTACGAACTTTTAATGTATCAGAGATATTAGATAAAGACCAACAAGATGATACAAAAAGGAAAACATTAGCTGAATTGGCTGACATTGATTTAGAAGATAAGGATAAGCCTGAAGAAAACAGGAACCCGTTGTCGCTTTTAAAAGCCCAGTCTTACCTTGAAAAGCCACAAAATTGTGAAGAACAGAACACAAATAAACTTGAAGTGAAACAGGAAGATAACTCTAGTGATTCATCTGATACAGAAGTGATAAATGAATTGGAAAAGCGAATTCAAGCTACAAGTAAGGCTAGGAGGAAGAAGGGTTCATCAATTCCCAAGCCGCGTCCTAGACAGCCTCTGAAAAACATGAAGGAGATTGAAAAGGTGTTCGACATTCAACTGTTCGCGACAGAGCAAGAGGCTAAGGATGAGCTGCAGCTTAGGAAGACTTCCGAGCGGTATCTCTCCGCGGAACACAAATGTGAAATATGTTACATGGTTTTCAAGTACTCTAAGCAACTGGAGTTCCATATGCAGTGGCAtcatCCATCAGCAGGAGAGTACGAATGCGCCGTTTGCAGTATGAGATTCCAAAACCGGGCGGCCGTCAGCAAACACAAGAACGGTGCTCACTATGGCAAGTTCAAATGCAAAAAGTGTCCGTTGATCACATACCATAAAATGGCAATGGCGGCGCACTACCAACGCCACGCGGGAGTCATATTTACATGCAAACTCTGCAATCATACTTTCAAACACACTTCGACGTACAAAACACATATGCGTCTGCAGCATATGACTGAGCATGTTTGCGTAACGTGCGCGCTAACCTTCGTCTCTGAAAAAGGACTGACCGCACATAGGAATAAAAAACATAAGACGAAATCCAAAGTGGACAAGGACGCAACAGCACACTGTGCGCCGTGCGGGCTCACGTTCGCGACTGAGCAAGTGTACACGGTGCACATCATGAATACGCACAGCCATAAGGATTTGGCAAACGCTATTATCGCGTGCAAGCTATGCGGCGTGCGATTCGAAGACAAGGAACATTTGAAAGACCACAAACGCTCGCAACATTCCAAATACCCGAAAGGCAAACTTGGCAAGACTTGGACCAAAAAAAACAACGACACCTACAACTGTTCAATATGTGGCGTGGAAGGCACCAGTAACACGTGGGTGTTGAAGCACGTTGCGTCCGCGCACCCGGATTCGGCCTACGTGGCGGACCTGACGAAGCGTCGGCAACACATGTGCGAAACCTGCGGGAAGTGCTATACCACGATCTACGCGCTCCGCGACCACCTGAACACGCACGCGGGGCGGCGGCCGCACGCGTGCGTGCAGTGCCCGGCGCGCTTCTCGTCGCGCAGCCACCTGCAGCTGCACGCGGAGTGGCACAAGCCCGCGCGCCGCGCGTGCACGCACTGCGGGAAGAAGTTCGTCAGCGCCTCCAATCTCAGCAATCACATGCGGTTCCATATCCAAGACAGACGCTTCAAGTGCTCGCTCTGTCACAAAGGGTTCTTGCACTCGGCGACGTTGCGCGAGCACATTCGCGGCGTGCACCACAACGAGCGGCGCGTGCGCAAGCTAGTCAAGCGCGAAGCCGTCACGGGGAACGCTTAA
- Protein Sequence
- MSKTICRICLRTDINTRDIDETLVDFHDEITEYAGYPSHLHELLAPSWLVCSIPSTFQFTINNDNLEPLLSTEELFIKQEKAEDELGNDLENNDISEATDTLQTNNDIQENFVYTDVSGTNYIVRTFNVSEILDKDQQDDTKRKTLAELADIDLEDKDKPEENRNPLSLLKAQSYLEKPQNCEEQNTNKLEVKQEDNSSDSSDTEVINELEKRIQATSKARRKKGSSIPKPRPRQPLKNMKEIEKVFDIQLFATEQEAKDELQLRKTSERYLSAEHKCEICYMVFKYSKQLEFHMQWHHPSAGEYECAVCSMRFQNRAAVSKHKNGAHYGKFKCKKCPLITYHKMAMAAHYQRHAGVIFTCKLCNHTFKHTSTYKTHMRLQHMTEHVCVTCALTFVSEKGLTAHRNKKHKTKSKVDKDATAHCAPCGLTFATEQVYTVHIMNTHSHKDLANAIIACKLCGVRFEDKEHLKDHKRSQHSKYPKGKLGKTWTKKNNDTYNCSICGVEGTSNTWVLKHVASAHPDSAYVADLTKRRQHMCETCGKCYTTIYALRDHLNTHAGRRPHACVQCPARFSSRSHLQLHAEWHKPARRACTHCGKKFVSASNLSNHMRFHIQDRRFKCSLCHKGFLHSATLREHIRGVHHNERRVRKLVKREAVTGNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -