Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388269.1:7508136-7520916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00047 0.024 15.2 0.2 2 23 144 165 143 165 0.93

2 11 0.00069 0.034 14.7 2.4 1 23 171 193 171 193 0.96

3 11 0.0003 0.015 15.8 0.2 1 23 291 313 291 313 0.98

4 11 4.2 2.1e+02 2.8 0.2 2 23 320 342 319 342 0.87

5 11 0.00024 0.012 16.1 0.0 3 23 394 415 392 415 0.90

6 11 0.057 2.9 8.7 0.6 1 23 432 454 432 455 0.93

7 11 1.1e-05 0.00056 20.3 0.2 1 23 484 506 484 506 0.98

8 11 0.00073 0.037 14.6 0.2 1 23 512 534 512 534 0.97

9 11 0.00041 0.021 15.4 0.3 1 23 540 562 540 563 0.95

10 11 0.049 2.4 8.9 0.4 1 23 578 600 578 600 0.97

11 11 0.0073 0.36 11.5 0.1 1 20 742 761 742 764 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00047	0.024	15.2	0.2	2	23	144	165	143	165	0.93
2	11	0.00069	0.034	14.7	2.4	1	23	171	193	171	193	0.96
3	11	0.0003	0.015	15.8	0.2	1	23	291	313	291	313	0.98
4	11	4.2	2.1e+02	2.8	0.2	2	23	320	342	319	342	0.87
5	11	0.00024	0.012	16.1	0.0	3	23	394	415	392	415	0.90
6	11	0.057	2.9	8.7	0.6	1	23	432	454	432	455	0.93
7	11	1.1e-05	0.00056	20.3	0.2	1	23	484	506	484	506	0.98
8	11	0.00073	0.037	14.6	0.2	1	23	512	534	512	534	0.97
9	11	0.00041	0.021	15.4	0.3	1	23	540	562	540	563	0.95
10	11	0.049	2.4	8.9	0.4	1	23	578	600	578	600	0.97
11	11	0.0073	0.36	11.5	0.1	1	20	742	761	742	764	0.93

Sequence Information

Coding Sequence: ATGGATGGAGACAGGGAGTTCAACCTCCATTGGGGAGGAGGGGAGGTTGTAGTGAAGCAAGACCCAGACAGCCCAGCAATATGTAGCATTGAAAGTGTGCATAGTGGATACCCTAATATGACTCCCGAAGAAATAATGGCGAATACAGATCAAATGGCTGCTGAGAACCTGATGTTCTTAGCTCAAGATGTTATAGGCTACACGGAGACTGCTGAACTAGACCCCAGTGTGGAGTGTGTTACTGAGGAAGTTATCACGGATGATTGGGTGGTTGGTGGCGGTCAGGAGAGGGTGGAAGTGCCGATGGAAAACTTAGCAGTCTCAGCAGAACTAAATCTAAAAGAAGAAAATGAAGATGTTGTTCCAATACCAACTGATCAAGAAATCAACCTACATTCACAAGACGAGTACACGGCAATGCGACCGTGGCCTTGCGACTTCTGCTCGCGTCGGTTCCGCAAGAAAGCAGCGCTCATGAACCACATGGTGGCGCATCAGAACGACAGGCCCCATGCGTGCAACCTTTGTGGTGTTCGATACGTGCGGAAATGTGATCTGATGAATCATCTAAAAGTTCACGCGTTCGTGCCTGATAATGCAGACTCTGTGGACTTTGAAGAACTGCTGGAAAACAACCAAATTGTCAAACCAAAGAAAAAGCGTGGAAGGCGGAAAAAGGTTCCAGAACCCGAAGAGGATGAGTGGGAAAACATGACGTCAGCGCGCACTCAGCAGTGGTCCCGCCGCGGCCGGTCCCCGGCCAAGCCGCCGCCGTCGCCGCCGCCGCCGATGTCGCCCCCGTCGCCGTCATCGCCGCCGCCGATGTCGCCGCCGTCGCCGCCGCCGCTGCCGGCTGACCCGTCGCGGCCGTTCGTCTGTCGGACTTGCGGCCTCGGCTTTGCGAGGGAGAAGGCACTACAGTCACATTCTAGGGTACACGGAGGCGACTCCCCGGTAGAGTGCAGTGAATGCGGCGAGCTTTGCTGGTCGCGGGAAGCGTTGGCCACGCATGCGCAGCAGCGGCATCCGCATTTACCCCCGCGCACCGCACAAGACACCAACTACAATGAGTCTGACTCAGGTGACGATATGGACTTCCGTCTGTCCCCCGATTCGGCTCGAAGCGGCAGTGCGCCCGAGCGGCCCGTGTTCGACACGATGCGAGGGCCCGAGCTGTTCTGCCCGGACTGTGGCGTCGCCTTCCAACGAGCCGATCTGTTGAGACGGCATGTCGCCGCGGCACATAGTTACAAGCGGCGCGGGCCGGGGCGCGAGAGCGGGCCGGGCTGGGAGCACACGTGCGACGCGTGCGGCGAGGCGTGCAGCGACGCGCTGCAGCTGCTCGCGCACGCCGAGCTGCACCACGACCGCCCGCACCCCAGCGCGCCCAGGTTAAAAAAATCGTCCAAAGGACGTAATAGCACGTCGATATCGAGTAGTTCACGGCAATTTCCTTGTAGGGAATGTGGCAAAGTGTTCGGTTCGCGGAGCTCGCAGCAGATCCACATTCGCATCCACACGGGGGAGCGGCCGTACGCGTGCCGGTTCTGCTGGAAGGCATTCGCAGACGGCGGCACACTCAGGAAACACGAGAGAATACATACTGGTGAGAAGCCGTACGCATGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTGCTCAGGGAGCACGTGCGCTCGCACCACTCCGCGCCGGACCGCCGGCAGCAGGCTAACGGTGGTACAGCGTATTCGTGTGTGGTTTGCTCGCGATCGCTGCATTCGAGCGTGGAGTTAGTACAGCATTTGATTCAGCACTGCGATGCTAACACAGCGTTGAAACGACAGCCACAGAACGGTCCCCGCAAATACAAGCGCCGGCGGAAGATCAAGAGCGACGTGTCCCCGAAACGCGAATGGGCGACCCCCTCCCCGCTCCCGCGGTCACGTTCCCCCTCGCCCTGCCCCTCGCCCTCGCGTTCCCCCTCCCCCTCGCCCGTGGCGTCCCCCCCGCGCCGCCGCTCGCGCCGCGAGCCGCCACCCCGCCCCCGCATGATACACACTTCGGAGGAACCGAAGGCGAAGACTAAGCAGGCCAAGACCTTACGTCAGCGTCGTCCACCGCGTCACCCGGCCGACGACCTGCGAGCCATCGGGCCCCACTCTCCGTCGCCGAAGCGCGAGCCTAGCTCCCCCATACAATCGCCTCAACCCGACGAGACGCCGGACGAAGGTGGCCCGTACAAATGCGAAATGTGCTCGCTGGAGTTCCCGCGACGAGATGCGTTGCTACTACACGTGCCCGTACATATATGA
Protein Sequence: MDGDREFNLHWGGGEVVVKQDPDSPAICSIESVHSGYPNMTPEEIMANTDQMAAENLMFLAQDVIGYTETAELDPSVECVTEEVITDDWVVGGGQERVEVPMENLAVSAELNLKEENEDVVPIPTDQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNADSVDFEELLENNQIVKPKKKRGRRKKVPEPEEDEWENMTSARTQQWSRRGRSPAKPPPSPPPPMSPPSPSSPPPMSPPSPPPLPADPSRPFVCRTCGLGFAREKALQSHSRVHGGDSPVECSECGELCWSREALATHAQQRHPHLPPRTAQDTNYNESDSGDDMDFRLSPDSARSGSAPERPVFDTMRGPELFCPDCGVAFQRADLLRRHVAAAHSYKRRGPGRESGPGWEHTCDACGEACSDALQLLAHAELHHDRPHPSAPRLKKSSKGRNSTSISSSSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRQQANGGTAYSCVVCSRSLHSSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKIKSDVSPKREWATPSPLPRSRSPSPCPSPSRSPSPSPVASPPRRRSRREPPPRPRMIHTSEEPKAKTKQAKTLRQRRPPRHPADDLRAIGPHSPSPKREPSSPIQSPQPDETPDEGGPYKCEMCSLEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00377360;
90% Identity: -
80% Identity: -