Ader014222.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388257.1:13854510-13870284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0023 0.12 13.1 4.7 1 23 76 98 76 98 0.98 2 11 1.8e-06 8.9e-05 22.9 0.6 1 23 104 126 104 126 0.99 3 11 0.00015 0.0073 16.8 2.6 1 23 132 155 132 155 0.95 4 11 0.025 1.2 9.8 3.3 1 21 161 181 161 183 0.95 5 11 0.00011 0.0056 17.2 2.7 1 23 189 211 189 211 0.99 6 11 4.6e-05 0.0023 18.4 3.2 1 23 217 239 217 239 0.98 7 11 0.0055 0.28 11.9 0.5 1 23 247 270 247 270 0.96 8 11 0.0055 0.27 11.9 4.5 2 23 277 298 276 298 0.96 9 11 0.00018 0.009 16.6 1.8 1 23 304 326 304 326 0.99 10 11 7.2e-06 0.00036 20.9 3.4 1 23 332 355 332 355 0.95 11 11 0.00026 0.013 16.0 6.6 1 23 369 391 369 391 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGGATCAGGATGTGAAGGCTCCGAAAGCTCCAGGGAGTGAGGGGGATCCCGAGGCTGCTGAGGATGCGGAGGATAATGAGGATGAAGATGATGACGAGGAGAAACAAGGCGATGCGACCGACGTATACACCTTCGAAGATGACGAGGAGGAAGCGGCGGAGTCCAACGACGACGACCCTCCCGCGGAGAAGAAACGCAAGAGGCACTCCCGTTCTCTGTTTACTTGCAACTACTGCGCTTACACCAGCCATAGACGCTACCTGCTCCTGCGCCACATGAAGTCCCACTCGGAGGACCGCCCGTACAAGTGCACGGTGTGCGAGCGCGGCTTCAAGACGCAAGCCTCGCTGCAGAACCACGTGAACATGCACAACGGTGTCAAGCCTCACATCTGCAAGTACTGCCAGAGTACCTTCACCACCTCCGGCGAGCTGGTCCGCCACGTGCGCTACAAGCACACTCACGAGAAGCCGCACAAGTGCAATGAGTGCGACTACGCGTCCGTTGAGCTGTCGAAGCTGCGCCGGCACGTGCGCTGCCACACCGGCGAACGACCCTACCAGTGCCCCCACTGCACATACGCGTCGCCGGACACGTTCAAGCTGAAGCGTCACCTGCGCACGCACACCGGCGAGAAGCCGTACAAATGCGACATGTGCACTATGTGCTTCACGCAGTCCAACTCGCTGAAGGCGCACAAACTCATCCACAACGTGTCCGAGAAGCCGGTGTACGCTTGCGAGCTGTGCCCGGCGAAGTGCGGCCGCAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCACACCTCGGACACGCCCCTTAAGTGCAAGCGCTGCGGGAAGTCCTTCCCTGATCGCTACTCCTGCAAGGTCCACAACAAGACCCACGAGGGAGAGAAATGCTATAAGTGCGACCTCTGCCCGTACGCGTCGACAACTCTGCGGCACCTCAAGTCGCACATCCTCAAGCATACGGACGAGAAACCGTTCGCGTGCGATCACTGCGACCAGTCCTTCAGGCAGAAGCAGCTGCTGCGCCGGCACCAGAACCTGTACCACAACCCCGACTACGTGCCGAAGCCGCCGAAGGAGAAGACGCACACGTGCCACGCGTGCCACCGCACGTTCGCGCACAAGGGCAACCTGATGCGCCACCTGGCGGTGCACGACCCGGACTCGGGGCACCACGAGCGCGCGCTCGCGCTCAAGCTGGGCAGGCAGAAGAAGGTCAAGTTCATCGACGCGGATTCTCTCAAGCATCCATTCCTGTCCGAGATCAAGACAGAAGGCGAGAACAGTGAGCTCCTCAAAGTCGGCGTGAGCAGTTCCCTCAAACGCGGCGAGCTGGTCACCGTGTCCGACGGCGACGGCCAGCAGTACGTGGTGCTGGAGGTGATCCAGCTCGAAGATGGAACCGAGCAGCAGGTTGCTGTGGTGGCCCCTGACTTCCTGCAAGCCACCGAGCTAGAGGAGGGAGAGGAAGAAGAAGAGGAAGAGACTGACGAGTACGGAGATGAAGAGGCGCTTGAAGACGACGAGAACGAGGAAGAGAAGAAGCACTCGCAGCAGCTGAAGCAGCAGCAGCTAGCCGCCGAGCGAAGCATCAAGCTGGAGAAGGAAGTGGACACGTGCTTCGGATTCGACGTCAGCGATGCGGAGGAGGAGGAAGAGGATGAGGAGGATAAAGCAGGCAGCTCCAACGCGCGGCCGACGCTGAGCCGGCAAGTGCAGCAGAAGACCATGATGTTCGAAGCGGAGGATGAGGAAGAGCAGAACGATGAGGAAGAGCAAGAGGTGGTGTTCGAGTTGGTGTGA
- Protein Sequence
- MDVDQDVKAPKAPGSEGDPEAAEDAEDNEDEDDDEEKQGDATDVYTFEDDEEEAAESNDDDPPAEKKRKRHSRSLFTCNYCAYTSHRRYLLLRHMKSHSEDRPYKCTVCERGFKTQASLQNHVNMHNGVKPHICKYCQSTFTTSGELVRHVRYKHTHEKPHKCNECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDMCTMCFTQSNSLKAHKLIHNVSEKPVYACELCPAKCGRKTDLRIHVQKLHTSDTPLKCKRCGKSFPDRYSCKVHNKTHEGEKCYKCDLCPYASTTLRHLKSHILKHTDEKPFACDHCDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHTCHACHRTFAHKGNLMRHLAVHDPDSGHHERALALKLGRQKKVKFIDADSLKHPFLSEIKTEGENSELLKVGVSSSLKRGELVTVSDGDGQQYVVLEVIQLEDGTEQQVAVVAPDFLQATELEEGEEEEEEETDEYGDEEALEDDENEEEKKHSQQLKQQQLAAERSIKLEKEVDTCFGFDVSDAEEEEEDEEDKAGSSNARPTLSRQVQQKTMMFEAEDEEEQNDEEEQEVVFELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161634; iTF_01336198; iTF_00663370; iTF_00811318;
- 90% Identity
- -
- 80% Identity
- -