Ader004769.2
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- Sall1
- Assembly
- GCA_947579855.1
- Location
- OX388286.1:5954679-5958709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00094 0.047 14.3 1.9 3 23 175 195 173 195 0.98 2 17 4.3e-05 0.0022 18.5 4.0 1 22 201 222 201 222 0.95 3 17 0.00091 0.046 14.3 2.4 1 23 244 266 244 266 0.95 4 17 4.1e-05 0.0021 18.6 0.3 1 21 272 292 272 293 0.95 5 17 0.0069 0.35 11.6 1.3 1 23 304 326 304 326 0.97 6 17 1.2e-05 0.0006 20.2 2.1 1 21 332 352 332 353 0.96 7 17 1.4e-05 0.0007 20.1 1.9 3 23 363 384 361 384 0.94 8 17 0.052 2.6 8.8 5.2 1 23 390 412 390 412 0.97 9 17 1.2e-05 0.00058 20.3 0.9 1 23 418 440 418 440 0.97 10 17 0.015 0.75 10.5 2.6 1 21 446 466 446 468 0.94 11 17 0.00014 0.0069 16.9 2.0 3 23 476 497 476 497 0.95 12 17 0.0028 0.14 12.8 0.0 1 23 503 525 503 525 0.96 13 17 0.00025 0.012 16.1 0.4 1 23 531 553 531 553 0.98 14 17 0.0061 0.3 11.7 0.4 1 21 559 579 559 580 0.94 15 17 0.0057 0.29 11.8 2.0 2 22 581 604 581 604 0.92 16 17 0.95 47 4.8 0.7 1 11 612 622 612 623 0.94 17 17 1.7 85 4.0 0.0 8 19 721 732 712 733 0.91
Sequence Information
- Coding Sequence
- ATGTCAACGACAGAGCCTATGTGCCGAGCGTGCCTTACCGGCGATCTCAACACAGACAATAGAATGCCTAAAACTATATGCTCGGTTTGTTATATGCAACTAAAGAGATTTGGAAAGTTCTCTGTAATGGCTCTCAAATCAGAAAAAATCCTGTTGGATGTACTCAACAGCGGTATTGATAAGATAACACTAAATACCATTACGTCGCTGAACTTGGATAGAACACAGACCTCGACATTGATCTCTTCACAGTCCACGTCTGTACATGAAGATAATTCAACTAAGTGCCCTGAGAACCCGGGTTCTCTGCAAATCCAACCACCAAATAGACAAGTACACAGTGATATTGATATGATTAAAATAGAAGTGAACATTAAAAAAGAATCTGAATCTGAAGATGAAGATTCAGTTAAAACTGAGAAGAACACAGATAGTGAAGATAGCGATATGGACGATGTAGTAGAACAGTCTCAAACAAAAAACGAAGCGAGCAATGAGAAGAATTCGATTACATCTTTCTGGTGTGATGTGTGCAGCAAAAAATTTACCACAATACATCTTCTTAAGTCCCATCTGATAAGTCATTCCGGGGCAAAGCCACACAACTGTGACACATGCAACAAATCATTCTCCAGAAAACACAACATGGTTCAGCACATGAAAACTTGCACTCCTGATAAGGAACAGATCAAAAGCGAAGCTTCCAACCCTGACAACTCGGACTTGTATTTCCATTGCGAAGTGTGCAGTAAGAAGTTCACCTCGAGACCTCTCTTGAAATCACATAAAGTCATTCACAGTGGAGAGAAACCATACAGCTGCGAGGGATGTAAAAAGTCCTTCGCCAGGAAGCAAGGCATGAAGCAACACATGCTTATTTGTACCGAAGTAAAACCTCAAACCCCGACGTACCCCTGCTCATATTGCACCCAGACTTTCGATTGTGAAAGTGATCTAAACGCTCACGCTACAACGCACTCCAAGGAAAAACCCTACACATGCGAGAAGTGCCACAAATCGTACACAACGAAGCCCAACATGCGTCAGCACATGAAGATCTGCTTCCTGGAGAACGAGGTGGTGAACTGCACTCTCTGTCCCCGAACGTTCAGCCGCAGGAGTGACCTGTGCAAGCATCTGAACGCGGACCACTCGGCGCAGAAGCCGTTCTGCTGCGACAGATGCAGCGCCAAGTTCTGGTACAAGAGCCACCTGAAGGTGCACCTGCGGATCCACACCGGGGAGAAGCCCTTCGCGTGCGAGGTGTGCGGCAGGACCTTCACGCTGCGCAACCACCTGAAGGCGCACCTCGGGACCCACTCGGGCGAGAAGCCGCACTCGTGTGAGGTGTGCGGGAAGGCGTTCCTCGCGAGCTTCAACCTGCGGGAGCACATGCGGTGCCACACGGGCGAGCGCCCCCACGGCTGCGGAGCGTGCGGGAAGCGCTTCGGCCACCAGAGCACGCTGCGGCAGCACCTGCGCCGAGTGCACGCGCACGCGAAGCCGTTCGCGTGCGGCGCGTGCTCGCTGTCGTTCTCGGCGGAGAGCGGGCTGAGCGCGCACATGCGCGTGCACACGGCGGAGCGGCCGTACGCGTGCGACGTGTGCACTAAAACGTTCTTCGAGGCGCGCTACCTGAAGGGGCACATGCAGGTGCACTCGGCGGCGCGGCCGCACAAGTGCGCCGCTTGCGGGAGCGCCTACAAGCGGCCGGAGCACCTGAAGCTGCACGTCCGCTCCAAGTGCAAGGCCCCGCGAGTCTGCAGCAAAAGGTTCCGGCACGTCGGCCACCTGAAGCTGCACCAGAGGAGCCGCCGAGTCCGCGTCGAGTTGTACGTCTGCGAGCGATGCAGCAAGACGTTCAAGCTGACGATGCGCACCTGCGCACTCACTCACCTGTGTGTGCCCCCGTGCCCCGCGTGCCCCCCGTGCCCCGCGCGCCCCCCGTGCCCCGCGCGCCCCGCGTGCGCTACGGCATTCAACCAGAAGTCGCACATGCTAACCGACACGCACTCCGCACTCGCGCGCCTCCACATACACACCGGCGAGCGGCCCGCGCGCGCTCAGCCGCCGCTCCTCGCTCAGGAAGCACAGGCGCCTGCACAGCGAGGTGAAGCGCTTCCTGAAGGCGCGTGCCCGCTCGCCTGCAGCGGCGCCCGTACGCGCTTCAAGCGGCCCGAGAACCTGAAGCAGCACGAGCCGGCCTTGCCTAGTTAG
- Protein Sequence
- MSTTEPMCRACLTGDLNTDNRMPKTICSVCYMQLKRFGKFSVMALKSEKILLDVLNSGIDKITLNTITSLNLDRTQTSTLISSQSTSVHEDNSTKCPENPGSLQIQPPNRQVHSDIDMIKIEVNIKKESESEDEDSVKTEKNTDSEDSDMDDVVEQSQTKNEASNEKNSITSFWCDVCSKKFTTIHLLKSHLISHSGAKPHNCDTCNKSFSRKHNMVQHMKTCTPDKEQIKSEASNPDNSDLYFHCEVCSKKFTSRPLLKSHKVIHSGEKPYSCEGCKKSFARKQGMKQHMLICTEVKPQTPTYPCSYCTQTFDCESDLNAHATTHSKEKPYTCEKCHKSYTTKPNMRQHMKICFLENEVVNCTLCPRTFSRRSDLCKHLNADHSAQKPFCCDRCSAKFWYKSHLKVHLRIHTGEKPFACEVCGRTFTLRNHLKAHLGTHSGEKPHSCEVCGKAFLASFNLREHMRCHTGERPHGCGACGKRFGHQSTLRQHLRRVHAHAKPFACGACSLSFSAESGLSAHMRVHTAERPYACDVCTKTFFEARYLKGHMQVHSAARPHKCAACGSAYKRPEHLKLHVRSKCKAPRVCSKRFRHVGHLKLHQRSRRVRVELYVCERCSKTFKLTMRTCALTHLCVPPCPACPPCPARPPCPARPACATAFNQKSHMLTDTHSALARLHIHTGERPARAQPPLLAQEAQAPAQRGEALPEGACPLACSGARTRFKRPENLKQHEPALPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -