Ader004409.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388286.1:846134-852950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-06 0.00011 22.6 3.3 1 23 193 215 193 215 0.98 2 11 5.2e-06 0.00026 21.4 3.9 2 23 222 243 219 243 0.95 3 11 4.6e-06 0.00023 21.6 4.3 1 23 249 271 249 271 0.98 4 11 2.6e-05 0.0013 19.2 1.4 1 23 277 300 277 300 0.98 5 11 0.00017 0.0086 16.6 2.3 3 23 312 332 311 332 0.97 6 11 2e-06 0.0001 22.7 3.5 1 23 338 360 338 360 0.99 7 11 0.00014 0.0072 16.9 1.8 3 23 368 388 367 388 0.98 8 11 8.3e-07 4.2e-05 23.9 0.6 1 23 394 416 394 416 0.97 9 11 2.9e-05 0.0014 19.1 3.5 1 21 422 442 422 444 0.95 10 11 2.8e-05 0.0014 19.1 0.9 1 23 450 472 450 472 0.98 11 11 1.2e-05 0.00059 20.3 0.7 1 23 478 500 478 500 0.98
Sequence Information
- Coding Sequence
- ATGAACGTAGCCTTGTGTCGAACGTGTCTAACTGAAACTGCTAAAATGAAATCGATCCGCAACACCCAACTCCAAGAAGTTTATGAAAAATTGTCTAATACCAAGCTCATCGCAGAAGATGGAAGGCCCGATACAGTCTGCTACTCCTGCTATGCACAACTACAGAGGTGCTGTAACTTCTCGGTTATGTCTCAAAAGGCTGATAACATGCTAACACAACTTTATTGTGATGGAATTGAGATATCACCTGTGGCTGTTGCTGAATTGCACAGAATTCTTGACTCTCTTGGTGCTATTAAGATTTCGCCGGACGATTTTCTAACACAAGAGAACTATCTGTTGGAGGAATACATGATACCAGATGACGTGGCGGTTGAAGAGGACGAACCACATCCTGTGAAAGTAGAATTAGATGTAGAGGATGAGGAAATCAAAATAGAAGATACAAAGAAACACAATGATAATGACAATATTAAAACAATGTTTTCTTCAGTTGGGGCTCCGCTGAGGAAAGTGAAGTCAGTTAAAGCAGAAACGTTTAAAAGCGATGAATCTTTTAATATCAAAGAAAAGCCATATATCTGTGACATGTGCAAGAAAACATTTGCTCACAAAACAAACTTAAAATCACATTTAAAAGTACACATTAGAAAAAAATGCAATGAATGTGATAAATGCAGTAAAAGATTCCCCAACAGATACGAATTAAAAAGGCATATTAGATCTCACACTGGAGAAAAACCATTTAAATGTGATCAATGCCACAGATCGTACTCAGACAGTGGCAACTTAAAGAAACATAAATTGACGCATACCGGCCTAAAGTCATACGTTTGCACTAACTGCGAAGCCTCGTTCACACTACAGGGTAACTTAAGACGGCACTACAAGAAATATCACACTGGACAACGGCCGGTGGTCAAACTTAGCGCGTGCGGTAGCTGCGGCAAAAAGTTCCGCCATGAATTACAGTTGATGAAACACTTAAGGTCGCATACTGGCGAAAAGCCGTACGAATGTGGCCATTGCGATAAAAAATTCGCACATGAATCCTACTTAAAAGCACACGTGAAAACCCACAGTGTGGAGAAGGAGAGCGCTTGCGACAGATGTGGTAAGACGTTCCTTGATAAATATAGACTTAAAAGGCATATGAAATCTCACACAGGCGAAAGGCCCTATGCGTGCGATCTTTGCGACAAAACTTACACAGACAGCGGCAACCTAAAGAAACATTTAAAGGATCATAGTGGTGAAAGGTCATATTTCTGCACGGAATGCAACGCCTCGTTCACGAGAAAAGGCAGTTTACAGCGCCATATTAGATGCCATACGGGTGTAAAGCCGTACAGTTGCGATGTCTGTCAGAAAACGATGGCTACTTCGACCCAATTGAAGAGGCATTTGAGGATTCATACCGGCGAACGGCCGTTTATATGTGATGTTTGCGGTAAAGCATACGCGGATAAAGACGACTGCAAGCGGCATATGAGAATTCACTCCGGTGAAAAGCCGTATGTTGACCAGGACGGCTTCATCTTGGTCGAGAAGAAGCGTCGACCAAATTCATCGCGCAACCAACGCGGGACCGCCCCCCGATCTCCGCTGTCACTGGAGGTCGTAGAACCGACCATCGGGATCTACATCTCCCGATTGGATCCGAATACTACTGGGGAGAGTGTTCTCCGGTATGTGGAAGAAAGAGCCCGTCGTCGGATCAGTCCAGCTCCAGAGGTTCTTGTACATGGCCTGAAACGCCTGGAGTCGAGTAGGGCGACTAACTTCAAGTCCTACGTGCTCCAGGTAGCTGCCAAGTACAAAGAGGTGTTCCTCGCGCCCGAATTTTGGTCAGCTGGAGTTGTCTACCGTCGCTACAGGGAGGCGCTCACGATCAAGAAAGTCCCTGACTCTAGATGTGGTGTAGTTATTTAA
- Protein Sequence
- MNVALCRTCLTETAKMKSIRNTQLQEVYEKLSNTKLIAEDGRPDTVCYSCYAQLQRCCNFSVMSQKADNMLTQLYCDGIEISPVAVAELHRILDSLGAIKISPDDFLTQENYLLEEYMIPDDVAVEEDEPHPVKVELDVEDEEIKIEDTKKHNDNDNIKTMFSSVGAPLRKVKSVKAETFKSDESFNIKEKPYICDMCKKTFAHKTNLKSHLKVHIRKKCNECDKCSKRFPNRYELKRHIRSHTGEKPFKCDQCHRSYSDSGNLKKHKLTHTGLKSYVCTNCEASFTLQGNLRRHYKKYHTGQRPVVKLSACGSCGKKFRHELQLMKHLRSHTGEKPYECGHCDKKFAHESYLKAHVKTHSVEKESACDRCGKTFLDKYRLKRHMKSHTGERPYACDLCDKTYTDSGNLKKHLKDHSGERSYFCTECNASFTRKGSLQRHIRCHTGVKPYSCDVCQKTMATSTQLKRHLRIHTGERPFICDVCGKAYADKDDCKRHMRIHSGEKPYVDQDGFILVEKKRRPNSSRNQRGTAPRSPLSLEVVEPTIGIYISRLDPNTTGESVLRYVEERARRRISPAPEVLVHGLKRLESSRATNFKSYVLQVAAKYKEVFLAPEFWSAGVVYRRYREALTIKKVPDSRCGVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -