Ader012864.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388268.1:1744834-1748333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0024 0.12 13.0 0.9 3 23 41 61 39 61 0.96 2 20 0.13 6.5 7.6 1.2 1 23 89 111 89 111 0.98 3 20 3e-05 0.0015 19.0 1.0 1 23 129 151 129 151 0.98 4 20 0.72 36 5.2 0.8 5 19 159 173 156 178 0.88 5 20 0.0002 0.0098 16.4 0.3 1 23 250 272 250 272 0.98 6 20 0.011 0.53 11.0 0.8 1 23 278 300 278 300 0.97 7 20 0.0033 0.16 12.6 0.6 2 23 309 330 308 330 0.97 8 20 4e-07 2e-05 24.9 1.3 1 23 336 358 336 358 0.99 9 20 1.8e-05 0.00091 19.7 1.0 2 23 365 386 364 386 0.98 10 20 1.7e-06 8.6e-05 22.9 0.4 1 23 392 414 392 414 0.98 11 20 2.2e-07 1.1e-05 25.7 0.7 1 23 420 442 420 442 0.99 12 20 0.00037 0.019 15.6 2.3 1 23 449 471 449 471 0.97 13 20 0.34 17 6.3 0.7 1 23 477 500 477 500 0.95 14 20 0.14 7.2 7.4 4.7 1 23 506 529 506 529 0.97 15 20 0.00024 0.012 16.2 0.0 2 20 537 555 536 557 0.94 16 20 1.8 90 4.0 4.0 2 23 607 628 606 628 0.95 17 20 0.0004 0.02 15.4 0.6 1 23 634 657 634 657 0.93 18 20 0.0013 0.065 13.9 0.5 2 20 661 679 660 683 0.91 19 20 0.048 2.4 8.9 0.3 2 21 688 707 687 708 0.94 20 20 0.039 1.9 9.2 2.2 1 23 739 764 739 764 0.96
Sequence Information
- Coding Sequence
- ATGCGGAAAGAGATAGCAAGCGTTAGAAGGCGCTCGAAAGTAATCGACAGTGCTATAAATGGCAGCCTTCTGCTTCAGGAAGGCTTCATCGTCAAGATAGAAAAAGTGGAAGTTCAACATTGTGACAGATGCCCCCAGGCATTTACCAACTCTAAAGATTTTGATGCGCATATTGCACGGCATCAAGTTAAGGATGTGTTGCATAAGGATAGGGTATTGGAGTATATGTTGAGCGCCAAAGTTTTGCTCGAGCGTGTCCAGATATACCAGTGTGGAAAGTGCTCTAGAGGCTTCCTGCACTATATCCCTCTGAATGAACACCAGAAAGTACATTCTAGAAAAAGAAAGAAAATACTAAATGAGGACAAAAGTGAATCAAAACCTCATAAATGTGAAGAGTGCGGCCTGAGGTTTGTGGAGTTATCCACACTCACGACCCACTTAAAAGTACATGAACCATTCCCTCACATCTGCCACTGCGGCATTGGATTCTACCAGGCGAAAGACCTAGAAACTCACGATAGACTAGTGCACTCCAAAATAGAATTCAGCGAAGCGATCATCAAGTCAGAATTTGCACTCAAACCAAAGAAAAAAGGAGCTAAATTAAAAGCAAAGAAGAAACCAAAATTGGAAGCCAAACGTGTAGTTCCTAAACGCAAATCAGAAAAACCCACACAAATAAAGACTCAGAGATGCAGTAGTTTCAAAGTAAATTGCAAATTAGTGAAAAACAAAGATGGCGATTATGAATGTTCCTTTTGTGGAGAGATTTACAAAGATGCAACTCAGTTCTTTGCTCATGTTAACTCTCACACGGGCAGGTGGCCTCATGTCTGTGACAAATGCCCTTACGGCTCAAAAACTCTAGCAATGCTGATAGTGCATAAGAAAAAACACGAAGGCGGCTACAACGGAATAATAAAGTGTGATGTATGTGCAAAAAAATCCAGCAGTACAACACATTTAGCAATTCATATGCTGATACACACGGGGGAAAAACAATACACGTGCACTTTGTGCTCCAAAAGTTTCACACAGCAGGGAGCTTTAAAAATACACTTAAGGAGGCACCAGGGTACCTACACTGACAAATGCGAACAATGCAACAAACTTTTTGTGGACAGAGGCGCTTTTAAGCGGCACTTGCGCACGCATAGCGGACTCAAGCCGTACAACTGCGAGTCCTGCGGGAAGGCGTTCTCGGACCCTTCAGCATTCAAGCGCCACAATCGCATCCACAGCGGGGTGAAGCCCTACCGCTGCCGGTACTGCCCCAAAGTGTTCAGCGACAACAGCGCTTGGATAACGCACATGCGCCGCCACGAGGGCTACACGAGTATGCACCCCTGCGTTATCTGCAACAAACAACTAGCAACCCATAATAACTTGAAAGCCCACTTAAAAACGCACTTAAAGAAAAATACGTTTGAATGTGACTATTGCGGAGTTATTAAACATAGAAAGGAGTATCTTGGTATGCACATCAGAAATGTCCATTTAAAAGCAAAGAACTATCAGTGTAGTTGCTGTGAGAATATGTTCCATACCAAGCGATATCTGGAGGCTCACATTAAAAGGGCCCATGTATTATTGAGTGAAGAACTCGTTTGCCCGATTTGCGGTGAGATGTTTAAAAACGAAGATTTAATGAAAAATCATATTGATAACAGGCTTTGCAAAGATATCGGTGAATATGATCCCTGCCGAACCAGATTAAGCCATAAGGATAGCGTGAAATCTGATATTATGAATCACTCAACTCGTTGCAAGACATGCAAAAAGAAGCACTCATTGCACTCACAGCATGAGTGCATTACTTGTTGTATGTGCAATAGATATTTTAAAACTGAATTGGTTATGAAAAGACATTTTCTGCGTCACTTCCACAACAGAAAACATGTGTGTCCGGAATGCCCGAAACGATTTTACGAAGTGTCTTCACTGGAGACACATCGCTCAGAATCCCATGGTGCAGTTTCGTGCGACCACTGCGGAGAAGTGTTCAATGGCAAAAGAGGATTGAGAACTCATATCTGGACCAAGCATATGCTGAGCATGTATTGCAACGTGTGCCTGAAGCGTTTTTACGAAGAATCCGAGTTCGTAAAACACAAAAGGGGTTGTATGAAAAAAAGAACGTGCAAATTTTGCAAATTGAAAGTACCAAAAGTATCCTTGGAGGCTCATTCGGCTCGGCATGTCAATGAGACATTTAAATGTGATAGATGCTGGATACCACAAGTATATAAGCACAAGTTTTCATTGTATAGTCATATGAGATCGATTCATGGAGTAGGCAAATAA
- Protein Sequence
- MRKEIASVRRRSKVIDSAINGSLLLQEGFIVKIEKVEVQHCDRCPQAFTNSKDFDAHIARHQVKDVLHKDRVLEYMLSAKVLLERVQIYQCGKCSRGFLHYIPLNEHQKVHSRKRKKILNEDKSESKPHKCEECGLRFVELSTLTTHLKVHEPFPHICHCGIGFYQAKDLETHDRLVHSKIEFSEAIIKSEFALKPKKKGAKLKAKKKPKLEAKRVVPKRKSEKPTQIKTQRCSSFKVNCKLVKNKDGDYECSFCGEIYKDATQFFAHVNSHTGRWPHVCDKCPYGSKTLAMLIVHKKKHEGGYNGIIKCDVCAKKSSSTTHLAIHMLIHTGEKQYTCTLCSKSFTQQGALKIHLRRHQGTYTDKCEQCNKLFVDRGAFKRHLRTHSGLKPYNCESCGKAFSDPSAFKRHNRIHSGVKPYRCRYCPKVFSDNSAWITHMRRHEGYTSMHPCVICNKQLATHNNLKAHLKTHLKKNTFECDYCGVIKHRKEYLGMHIRNVHLKAKNYQCSCCENMFHTKRYLEAHIKRAHVLLSEELVCPICGEMFKNEDLMKNHIDNRLCKDIGEYDPCRTRLSHKDSVKSDIMNHSTRCKTCKKKHSLHSQHECITCCMCNRYFKTELVMKRHFLRHFHNRKHVCPECPKRFYEVSSLETHRSESHGAVSCDHCGEVFNGKRGLRTHIWTKHMLSMYCNVCLKRFYEESEFVKHKRGCMKKRTCKFCKLKVPKVSLEAHSARHVNETFKCDRCWIPQVYKHKFSLYSHMRSIHGVGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -