Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388286.1:5940361-5943692[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.016 0.81 10.4 4.4 1 23 206 228 206 228 0.98

2 15 0.0023 0.11 13.1 0.7 2 23 253 274 253 274 0.95

3 15 0.00064 0.032 14.8 3.5 1 23 280 302 280 303 0.95

4 15 0.0066 0.33 11.6 4.5 1 21 309 329 309 334 0.93

5 15 0.00029 0.014 15.9 0.3 3 23 343 363 341 363 0.98

6 15 0.00031 0.016 15.8 0.5 3 23 371 392 369 392 0.94

7 15 2.5e-06 0.00012 22.4 4.0 1 23 398 420 398 420 0.98

8 15 0.00029 0.015 15.9 1.5 1 23 426 448 426 448 0.96

9 15 8.1e-06 0.00041 20.8 4.4 1 23 462 484 462 484 0.98

10 15 5.9e-07 2.9e-05 24.4 3.0 1 23 490 512 490 512 0.97

11 15 0.005 0.25 12.0 3.2 1 23 518 540 518 540 0.97

12 15 1.4e-05 0.0007 20.0 1.0 1 23 546 569 546 569 0.97

13 15 2.2e-05 0.0011 19.4 1.7 1 23 575 597 575 597 0.97

14 15 2.1e-07 1.1e-05 25.8 1.5 1 23 603 625 603 625 0.98

15 15 0.017 0.86 10.3 0.5 1 21 631 651 631 652 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.016	0.81	10.4	4.4	1	23	206	228	206	228	0.98
2	15	0.0023	0.11	13.1	0.7	2	23	253	274	253	274	0.95
3	15	0.00064	0.032	14.8	3.5	1	23	280	302	280	303	0.95
4	15	0.0066	0.33	11.6	4.5	1	21	309	329	309	334	0.93
5	15	0.00029	0.014	15.9	0.3	3	23	343	363	341	363	0.98
6	15	0.00031	0.016	15.8	0.5	3	23	371	392	369	392	0.94
7	15	2.5e-06	0.00012	22.4	4.0	1	23	398	420	398	420	0.98
8	15	0.00029	0.015	15.9	1.5	1	23	426	448	426	448	0.96
9	15	8.1e-06	0.00041	20.8	4.4	1	23	462	484	462	484	0.98
10	15	5.9e-07	2.9e-05	24.4	3.0	1	23	490	512	490	512	0.97
11	15	0.005	0.25	12.0	3.2	1	23	518	540	518	540	0.97
12	15	1.4e-05	0.0007	20.0	1.0	1	23	546	569	546	569	0.97
13	15	2.2e-05	0.0011	19.4	1.7	1	23	575	597	575	597	0.97
14	15	2.1e-07	1.1e-05	25.8	1.5	1	23	603	625	603	625	0.98
15	15	0.017	0.86	10.3	0.5	1	21	631	651	631	652	0.93

Sequence Information

Coding Sequence: ATGCTACCACATCACCCAGACCCGGAACAAATATTTGCAGATCATGCAAACATTTGTCCCGCAGCTGGAAACGAACCCGCCCCCGTTGCGTCTCAGACGGGCCCCCGATGCCGTCTCATGAACACCGCCATCTATCATTCCGTGTGCCGCGTGTGCCTCGCGGGCGGCCGGCGAATGCGGGCAGTCGACGACAGCCAGCTCCGAGACACATTCGAGAAACTGACAGGCACCAAGCTAAACGCAAGAGATGGCAGGCCGAGTGTGCTGTGCTACATCTGTTCCTCTCAGCTGCGGAGATGTTGCAGGTTCTCCGACATGGCGCACACATCTGAGAAGCTTCTCAGACATATATTGCAGAACAACATGGAGGTGTCGTCCGAGACAGTTGCTTCACTAAAGATGGGGATCACACACAGTTTATCCATCACCACATTAAGATCCATATCTCTTGATGGCAGTGCGATAGATGGCAGTACTCAAACGATGTACGATGAAGTAGCCGTGAAACAAGAAATAACCAGAGGAGACTCGCCTAAAATGGAAATAAGCTCAACAGAAGATATTGATTTACAAAATAATATTAAAGCAGAAATCAACACTAACAGCACAGACTACTACTGCTGTCACGTGTGCCAAAAGACATCTATGACGAAAAACGAATGGTTATCCCACTTGAGAATCCACCCAACTGAAGATAAAATGCCTATAGAAACCTACAATAATAAAACTGAGAGAACCCAAAACAAGCAGGGTGCCCGCTGCAAAGTGTGCAATAAGATCTTCTCCGAGCTCAAAGCCCTGAAACTTCACTCGAGCGTCCACACCGGCGCCAGGCCCTTCGTCTGCCATCTGTGCAGCCAAGCCTTCCGCCTTAAACAGAGCTTACAAAACCACATCACAGTCCACCACACCGGAGAGAAGAGATTCGTTTGCGATACTTGCAGCAAATCCTTCTTCCACAAAAAGGGTTTGATCGCACACAAGAAGTCTCCGAAGTGCCACTGTCCTACGTACAAGCCGTACGGCTGCAAGACGTGTGACGCAACGTTCGCGGACGTCGCCTCTCTGAGGCAGCACCGGCGCTCGCACGCCGGGGAGAGGCGGTTCGGCTGCAACCGATGCGACAAGGCGTTCACTGTCAAAAGGTACTTGGCAAAGCACATCACCCAAGTCCACTCGGCGGAGACACCCTTCCCCTGCCACAGATGCAGTAAGAAATTCAAACAACTGAGCACCTTGAAGGTTCACATGAGAATCCACACAAAGGAGAAGCTGTTCGCCTGCCAGGTGTGCGGGGAAACGTTCCTGCACAACTCGTCCTTGAAAAGACACGCGTCGCGCCACACCGACGGCGAGCCGCTCGCTCGCACCGACGAGTGGCCTTACTGCTGCGACAGGTGCAGCAAGAAGTTCAAGTCGCAGGCCAGCCTGAAGGCTCATCTGAGAACGCACACCGGGGAGAAGCCGTTCTGTTGCGACACGTGCGGGAGGAGGTTCAGCCAGAAGGGGAATCTGCAGCTACACATGAAGATCCACTTCGGGGAGAAGGCGTTCGCCTGCGAGATCTGCGGGAAGACGTTCCTCCTCAAGTGCCAACTGAAAATCCACCACCAGGTGCACTCCGAGCAGAAGCCGTACGCTTGCAACAGATGCGAAATGACGTTTACTTTCAAAAGTGCACTCAAGGAGCACATCCGTCGGCTCCACACTGAAGTGAAGGCGTTCGCCTGCAACAAGTGTGGGAAATCCTTCGAGCAGGAGTGCAGTCTCGCGAGCCACGCGCGACGTCACGCGGCGGAGAAAGTGTACTCTTGCAAGAAATGCAGTAAAAGTTACACGACAGCCGAGAATCTGAAGCGGCACATCGCGACCCACAGCGAGGAGACGCCGTACGCCTGCGACAGATGCAACAAGGCGTTTAAGATAATGCGGTACTTGCAGCAACACAAGATGTCGGCGCGGTGCCGCGCTCTCCGCGACTAG
Protein Sequence: MLPHHPDPEQIFADHANICPAAGNEPAPVASQTGPRCRLMNTAIYHSVCRVCLAGGRRMRAVDDSQLRDTFEKLTGTKLNARDGRPSVLCYICSSQLRRCCRFSDMAHTSEKLLRHILQNNMEVSSETVASLKMGITHSLSITTLRSISLDGSAIDGSTQTMYDEVAVKQEITRGDSPKMEISSTEDIDLQNNIKAEINTNSTDYYCCHVCQKTSMTKNEWLSHLRIHPTEDKMPIETYNNKTERTQNKQGARCKVCNKIFSELKALKLHSSVHTGARPFVCHLCSQAFRLKQSLQNHITVHHTGEKRFVCDTCSKSFFHKKGLIAHKKSPKCHCPTYKPYGCKTCDATFADVASLRQHRRSHAGERRFGCNRCDKAFTVKRYLAKHITQVHSAETPFPCHRCSKKFKQLSTLKVHMRIHTKEKLFACQVCGETFLHNSSLKRHASRHTDGEPLARTDEWPYCCDRCSKKFKSQASLKAHLRTHTGEKPFCCDTCGRRFSQKGNLQLHMKIHFGEKAFACEICGKTFLLKCQLKIHHQVHSEQKPYACNRCEMTFTFKSALKEHIRRLHTEVKAFACNKCGKSFEQECSLASHARRHAAEKVYSCKKCSKSYTTAENLKRHIATHSEETPYACDRCNKAFKIMRYLQQHKMSARCRALRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -