Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388287.1:514183-518890[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.7e-06 0.00029 21.3 0.8 2 23 187 208 186 208 0.97

2 14 0.017 0.84 10.4 0.8 1 23 214 237 214 237 0.90

3 14 0.00018 0.0089 16.6 0.1 1 23 243 265 243 265 0.98

4 14 3.6e-06 0.00018 21.9 1.7 1 23 270 292 270 292 0.99

5 14 1.4e-05 0.00069 20.1 3.2 1 23 298 320 298 320 0.99

6 14 1.3e-06 6.3e-05 23.3 1.0 1 23 326 349 326 349 0.95

7 14 0.00011 0.0056 17.2 2.9 1 23 355 377 355 377 0.97

8 14 2.5e-05 0.0012 19.3 0.9 1 23 383 405 383 405 0.98

9 14 0.00017 0.0085 16.6 1.0 1 23 411 433 411 433 0.98

10 14 1.1e-07 5.5e-06 26.7 1.1 1 23 439 461 439 461 0.98

11 14 4.1e-06 0.00021 21.7 3.5 1 23 467 489 467 489 0.98

12 14 0.16 7.8 7.3 2.8 1 23 495 514 495 514 0.94

13 14 1.5e-06 7.7e-05 23.1 0.4 1 23 520 542 520 542 0.98

14 14 0.28 14 6.5 4.0 2 23 549 570 548 570 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.7e-06	0.00029	21.3	0.8	2	23	187	208	186	208	0.97
2	14	0.017	0.84	10.4	0.8	1	23	214	237	214	237	0.90
3	14	0.00018	0.0089	16.6	0.1	1	23	243	265	243	265	0.98
4	14	3.6e-06	0.00018	21.9	1.7	1	23	270	292	270	292	0.99
5	14	1.4e-05	0.00069	20.1	3.2	1	23	298	320	298	320	0.99
6	14	1.3e-06	6.3e-05	23.3	1.0	1	23	326	349	326	349	0.95
7	14	0.00011	0.0056	17.2	2.9	1	23	355	377	355	377	0.97
8	14	2.5e-05	0.0012	19.3	0.9	1	23	383	405	383	405	0.98
9	14	0.00017	0.0085	16.6	1.0	1	23	411	433	411	433	0.98
10	14	1.1e-07	5.5e-06	26.7	1.1	1	23	439	461	439	461	0.98
11	14	4.1e-06	0.00021	21.7	3.5	1	23	467	489	467	489	0.98
12	14	0.16	7.8	7.3	2.8	1	23	495	514	495	514	0.94
13	14	1.5e-06	7.7e-05	23.1	0.4	1	23	520	542	520	542	0.98
14	14	0.28	14	6.5	4.0	2	23	549	570	548	570	0.95

Sequence Information

Coding Sequence: ATGTCTGAGACGTGGGCTACAGACGGCCTATGCCGTTGTTGTCATTCAAAAGGCCATTTCAAGAGTTTTGGAAACATAAACACGCATGAGGATGCCTACTCCGCGATTCTGCATCAAACTTTCGATATTGTTCTATCACAAACAACCAATAGCAGTTTAACAGTTTGTGGTGTTTGTGAAGCGAGGCTGCGGGATGCTGCACTCTTCAAGAGGCAGGTTCAGGAGTGCGAGGAACGGTTCAGACATGTTTACCTTGGGCTTAAAGATGATGGTAGCTTTGCAAAGGAAGTTAAAGTGGAAATTGACAGTATTACTGAAGCATGTAAAGAAGAAACTATGAAAATTGATCAAGAATCTGATGACAAATACAATGCGACAAAATCGTCGGGACTGTTCATGGAACCCTCGGTAGATGTTGATGACCAGCCTCTAAGCAATTTGAAGGTATCTATGGAACAGCAGCCAGTGGAAGAACAGAACACAGAACAAGAAGACTGGGCACATGATTATAGCGATGAAGACACAAAACCCCCAGCCAAGACGAAGACCAAGAAATTACGCTGCAGTTATTGCGAAAAACAATTCACATACAACGGCTCTCTTGAAATGCACATGAAAATACACACAGGAGAAAAGTCATACATTTGTCTACTCTGCGCTGAAACATTCCAAACAAACAAAGATTTGACCAAACACTTCGGCTCTAAACATAATGAAGGGACCAAATAcccttgtactttatgtcccaaggtattagacaagccaaaactactgaaaaaccacttaaacatacattttgagaagaaattcaagtgctcggagtgtgagaaagagttccaacgcaaaaaaggcttgaaagaacacatgaaagtccacacaggggaaagaaagtaccagtgcggtgtctgccagaagtcgttcggtcacaatcagactttaaaatcccatatgtatacccacaccggtgagaaaccatacatttgtgatgtctgtggccggaggttcccccaacggactcacttaaaaagacacatttatataatccacaatcagatcaaagcgcattcatgtggcacttgtaagaagaatttttccagcaaaagctacttagccatccacgaacgacaacacacaggtgtcaagccgttctcctgtgaagtttgcaagaaggatttcactgcgtacacaaccttaaaagtccatatgcgggtgcacactgggttcaagccgtacgcatgcggcttctgtcaacgtcagttcgcccagctagcttcttttaagctgcatcaacgaacccacaccggtgaaaagccttacagctgtaaagtctgccgcaaatcattttctgataacggctaccttaaaatacacatgagggtccactccggggaaaagccgtttagctgtgaggtttgcaagcgttgcttcagagaaacgggccagttgaaacggcacatgaggatccacacagggattaaagcttatacgtgtaaaatctgcaataaacaaataggcaatttgtcaaagcatatgaaagtccacagcgaagagagaccgttcaattgtggtgtgtgtaataagcagttttctgtgaacgggaatcttaaagtgcatatgaaggtacatttaggttctaagccgctttcctgcgaaatctgttgcactgaatccactcagagctcgggtttgaagcgacataggtgcgttcaCAAAGATATGGACTATAGGGAAAGTTAA
Protein Sequence: MSETWATDGLCRCCHSKGHFKSFGNINTHEDAYSAILHQTFDIVLSQTTNSSLTVCGVCEARLRDAALFKRQVQECEERFRHVYLGLKDDGSFAKEVKVEIDSITEACKEETMKIDQESDDKYNATKSSGLFMEPSVDVDDQPLSNLKVSMEQQPVEEQNTEQEDWAHDYSDEDTKPPAKTKTKKLRCSYCEKQFTYNGSLEMHMKIHTGEKSYICLLCAETFQTNKDLTKHFGSKHNEGTKYPCTLCPKVLDKPKLLKNHLNIHFEKKFKCSECEKEFQRKKGLKEHMKVHTGERKYQCGVCQKSFGHNQTLKSHMYTHTGEKPYICDVCGRRFPQRTHLKRHIYIIHNQIKAHSCGTCKKNFSSKSYLAIHERQHTGVKPFSCEVCKKDFTAYTTLKVHMRVHTGFKPYACGFCQRQFAQLASFKLHQRTHTGEKPYSCKVCRKSFSDNGYLKIHMRVHSGEKPFSCEVCKRCFRETGQLKRHMRIHTGIKAYTCKICNKQIGNLSKHMKVHSEERPFNCGVCNKQFSVNGNLKVHMKVHLGSKPLSCEICCTESTQSSGLKRHRCVHKDMDYRES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -