Ader017791.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388285.1:2186289-2190642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.18 9.2 7.1 0.5 2 23 33 55 32 55 0.92 2 29 1.3 66 4.4 0.3 2 23 80 102 79 102 0.96 3 29 0.14 6.8 7.5 0.8 2 23 123 144 122 144 0.94 4 29 1.6e-05 0.0008 19.9 0.4 1 23 148 171 148 171 0.97 5 29 0.15 7.4 7.4 2.1 1 21 176 196 176 197 0.93 6 29 0.076 3.8 8.3 0.3 1 23 204 227 204 227 0.94 7 29 0.2 10 7.0 4.5 1 23 234 257 234 257 0.90 8 29 0.00062 0.031 14.9 1.4 1 23 262 284 262 284 0.97 9 29 3.9e-06 0.0002 21.8 0.6 1 20 290 309 290 312 0.94 10 29 0.00082 0.041 14.5 2.9 1 23 318 341 318 341 0.97 11 29 1.1 57 4.6 0.6 2 23 386 408 385 408 0.91 12 29 1.5 73 4.2 0.2 2 23 433 455 432 455 0.94 13 29 0.063 3.2 8.5 0.7 2 23 478 499 477 499 0.96 14 29 1.4e-05 0.00071 20.0 1.0 1 23 503 526 503 526 0.97 15 29 0.84 42 5.0 0.2 1 23 559 582 559 582 0.93 16 29 6.8e-05 0.0034 17.9 0.9 1 23 589 612 589 612 0.96 17 29 0.0032 0.16 12.6 0.2 2 23 618 639 617 639 0.96 18 29 6.7e-06 0.00033 21.1 1.2 1 20 645 664 645 667 0.94 19 29 0.00082 0.041 14.5 2.9 1 23 673 696 673 696 0.97 20 29 0.15 7.3 7.4 0.5 2 23 741 763 740 763 0.93 21 29 4.9 2.4e+02 2.6 0.1 2 23 788 810 787 810 0.94 22 29 0.4 20 6.0 0.6 2 23 836 857 835 857 0.93 23 29 0.0003 0.015 15.9 0.4 1 23 861 884 861 884 0.96 24 29 0.1 5.1 7.9 2.0 3 21 892 910 891 911 0.93 25 29 0.49 25 5.7 0.3 1 23 918 941 918 941 0.94 26 29 0.0012 0.059 14.0 0.4 2 23 949 971 948 971 0.95 27 29 0.0082 0.41 11.3 0.3 2 23 977 998 976 998 0.96 28 29 7.2e-06 0.00036 21.0 0.5 1 20 1004 1023 1004 1026 0.94 29 29 0.00082 0.041 14.5 2.9 1 23 1032 1055 1032 1055 0.97
Sequence Information
- Coding Sequence
- ATGAAATACCCGAATGTGTCCACGGCGAAGCGCAACGCAGAGGTTATCGTGAGACATTCAACAGTGTACCCGTTCAGACTTCCCGAACACTCTATGGTCTGTGTATTCTGCTGCGAAAGTTACGAGAGCCCTTCTGCGTTTAGAAAGCATATGGATATCGAACACCAGACGTTTTCTGTCCGAATAGCCTTCGCACATTGCTCTGAAGGTTATCTAAAAGCTGACTGCTCCGATATCCGATGCCGTATCTGTTTAGAGCCGTGTTACAGTCTCGAAGAAGTCGCTATTCATTTACGAAAAACTCACCAAAAACCACTAGACCTGACAGCGCCGTTAGGGATACAACCTTTCAAACCAGATAAACTAAAATGTGCTATTTGCGACTTAAAAGTGTTCAGCCTCAGAAGGCTCAGTCGGCACACCCAGACTCATTTCCTGAGGTTCACCTGTGAGTCCTGTGGAAAGTCCTACGCTACCAACACAGCTCTACAAGTCCACATTAAATACTCGCACATAATAAAAGAACATTACTGTAGAAAATGCAAAACTAAGTTCAGTTCGTTAGATGCAAAACGAAATCACCTGCAGGTGTCTCCAAGGTGCTGGTCTTACCTGTGTAATATGTGTGGCGATAGATTTATATCGTGGAATATGAAGCAACTGCACATGAAGGAGATACACGGGGTCCCAGAGGAGTCGCACGTCTGTCCAGAATGTGGCAAGAATTTTGCAGAAAAGAAGGCTTGTCTGCACCATTTCAAAGTAACACATACAGATGACAATTTTGTTTGCTCGTTCTGCGGCCTAAAGTTTGCAACAAAAAAATATTTCGAAGAgcatagagtcactcacacgaacgaaaagccctacccgtgtactgtttgttcaaaagcgttttctaggaagaagaatttaactcagcacatgtggatacacagcgagtataagcgattcgaatgcaaactctgcaacaagaagttcaatcagagagtcagctggaaatcccataacaaaacgaatcaTCCGGAGTTATTGCAATATGAGCAAGAAAACGAAAGCAAATTGAACGGGAATTTGAATACGGCGAGGCACAACGCCGGGGTTATCGTGAGACATTCAACAGTGTACCCGTTCAGGCTTCCCGTAAACTGTATGGTCTGTGTGTTCTGCTGCGAAAATTTCGAGGAAGCATCTGCATTTAGGAAGCATATGGATATGGAACACCAGACGTTCTCGCTTCGGAATGCGTTCGCACATTGCTCGGAAGGTTTTCTAAAAGCCGACTGCTCAGACATCCGATGCCGCATCTGTTTCGAAACGAGCGACACTCTTGAGGATATTGCAATTCACTTGAAAAAGAATCACCTTAAACCGCTGGATTTATCATCACCTTTAGGGATAGAACCTTTCAATTTCAAATCTGAAAAACTGAGATGCGCGATTTGCGAGACAAAAGCTTACAGCCTCCGGCAGCTCAGTAGGCACACGCAGACTCATTTTCTGAGGTTCACCTGCGAGTCCTGCGGAAAGTGCTACGCTACCAATACCGCGTTGCAAGTCCATATTAAAATAACTCACATCGTAAAAGGATATTTATGCATCAAATGTAAAACTCAATTCGAGTCATCAGAAGCGAGGAGAACACATTTGAAAGAGTCTCCTAGATGCTGGTCATACCTATGCAACATGTGTGGCGATAGATTCATATCCATTACAACCAAGCAGCTGCACATGAATGAGGCTCATGGGGTCGCGAAGAAGCCGCATGTCTGTCCCGAGTGCGGAGAAATGTTCAAAAACAATAAGGCGTTCGCAAACCACTTCAAAGTTACCCACACGGACGATAATGTGGTTTGCCCGTTTTGTGGGCTCAAGTTTGCGACGAAATTAACATATGAACAGCACCGAGTAACTCACACGAACGAAAAGCCCTACACGtgcaacgtttgttcaaagtcttattctagaaagaacaatttgacccagcacatgtgggtgcacaaagaggataaaagattcgaatgcaagctctgtaacaagaagtttaatcagagggtcagctggaaGTCTCACAATAAAACAAATCATCCGGAGTTATCGAGCTTTGAGCAAGAGAACGATAAATCGAAATACTCGTATCCGCCTGCGGCGAAGCACAACGCCGAGGTTATCGTAAAACATTCAACAGTGTACCCGTTCAAACTTCCCGAACACTGTATGGTCTGTGTGTTTTGCTGCGAAAGTTTCGAGGAACCCTCTGCATTTAAAAAGCATATGGAAATCGAACACCGGACGTTTTCTCTTCAAGTAGCCTTCGCGCATTGTTCTGAAGGCTTCATAAAAGCCGACTGCTCTGATATTCGATGCCGCATTTGTTTCCAACCGAGTGATAGCCTCGAAGCAATTGCTATTCATTTGCGAAAGAACCATAACGCTGTCACAAAATCATTGGATTTGAAAGCTCCCTTAGGAATTCAACCTTTCAATTTCAAACCGGAAAAGCTTAGGTGCGCTATTTGCGAGTCAAAAGCTTACAGCCTCCGTCAGCTCAGCCGTCACACGCAGACTCATTTCCTGAGGTTCACCTGCGAGTTCTGCGGGAAAGCCTACGCTATCAATACCACATTACAAAGCCACATAAGAGACTTCCACATAAAAATTGACGAACGCTACTGCCGTAAATGCAAAACTCATTTCAGTTCTGCTGATGAAAAGAAACGTCATCTACAGGAGTCCCAAACGTGCCGTAAATACGTCTGCAGTGTGTGCGGTGATAGGTTCATATTCGGTTACCTTAAACAGCAACACATGAAAGACGCTCACGGAGTCGCAAAGAAGCCTCAAGTTTGCCCCGAGTGTGGAGACGTGTTCAAAAACAAGAAAGCGTTCGAAAATCACTTCAAAGTTAAGCATACAGACAATAATGTCGTTTGCCCCTTTTGTGGGCTTAAGTTTGCGTCTAAATTAAGATACGAACGGCACCGAGTCACCCACACGAACGAAAAGCCCTACACATGCAGTGTTTGTTCAAAGTCATATTCTAGAAAGGATAACTTAGCTCAGCACATGTGGGTACACAAGGAGGATAAAAGATTTGAATGCAAACTCTGTAACAAGAAGTTCAATCAGAGAGTCAGCTGGAAATCCCACAATAAAACAAACCATCCAGAATTATCTAACTTGTGTGAATCAAAGAACGATAGAGTCTAA
- Protein Sequence
- MKYPNVSTAKRNAEVIVRHSTVYPFRLPEHSMVCVFCCESYESPSAFRKHMDIEHQTFSVRIAFAHCSEGYLKADCSDIRCRICLEPCYSLEEVAIHLRKTHQKPLDLTAPLGIQPFKPDKLKCAICDLKVFSLRRLSRHTQTHFLRFTCESCGKSYATNTALQVHIKYSHIIKEHYCRKCKTKFSSLDAKRNHLQVSPRCWSYLCNMCGDRFISWNMKQLHMKEIHGVPEESHVCPECGKNFAEKKACLHHFKVTHTDDNFVCSFCGLKFATKKYFEEHRVTHTNEKPYPCTVCSKAFSRKKNLTQHMWIHSEYKRFECKLCNKKFNQRVSWKSHNKTNHPELLQYEQENESKLNGNLNTARHNAGVIVRHSTVYPFRLPVNCMVCVFCCENFEEASAFRKHMDMEHQTFSLRNAFAHCSEGFLKADCSDIRCRICFETSDTLEDIAIHLKKNHLKPLDLSSPLGIEPFNFKSEKLRCAICETKAYSLRQLSRHTQTHFLRFTCESCGKCYATNTALQVHIKITHIVKGYLCIKCKTQFESSEARRTHLKESPRCWSYLCNMCGDRFISITTKQLHMNEAHGVAKKPHVCPECGEMFKNNKAFANHFKVTHTDDNVVCPFCGLKFATKLTYEQHRVTHTNEKPYTCNVCSKSYSRKNNLTQHMWVHKEDKRFECKLCNKKFNQRVSWKSHNKTNHPELSSFEQENDKSKYSYPPAAKHNAEVIVKHSTVYPFKLPEHCMVCVFCCESFEEPSAFKKHMEIEHRTFSLQVAFAHCSEGFIKADCSDIRCRICFQPSDSLEAIAIHLRKNHNAVTKSLDLKAPLGIQPFNFKPEKLRCAICESKAYSLRQLSRHTQTHFLRFTCEFCGKAYAINTTLQSHIRDFHIKIDERYCRKCKTHFSSADEKKRHLQESQTCRKYVCSVCGDRFIFGYLKQQHMKDAHGVAKKPQVCPECGDVFKNKKAFENHFKVKHTDNNVVCPFCGLKFASKLRYERHRVTHTNEKPYTCSVCSKSYSRKDNLAQHMWVHKEDKRFECKLCNKKFNQRVSWKSHNKTNHPELSNLCESKNDRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -