Ader006970.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388282.1:2742901-2746370[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0022 0.11 13.1 1.9 1 23 216 238 216 238 0.98 2 16 8.1e-06 0.00041 20.8 0.9 1 23 244 267 244 267 0.93 3 16 0.043 2.2 9.1 0.9 3 23 276 296 275 296 0.97 4 16 0.00015 0.0077 16.8 2.1 1 23 304 326 304 326 0.96 5 16 0.00015 0.0076 16.8 4.2 1 23 335 357 335 357 0.96 6 16 1.2e-07 6e-06 26.5 2.4 1 23 363 385 363 385 0.99 7 16 7.9e-05 0.004 17.7 2.9 1 23 391 413 391 413 0.98 8 16 1.1e-06 5.5e-05 23.5 1.0 1 23 419 441 419 441 0.98 9 16 0.00011 0.0056 17.2 2.0 1 23 447 469 447 469 0.97 10 16 1.7e-06 8.6e-05 22.9 0.2 1 23 475 497 475 497 0.98 11 16 2.9e-06 0.00014 22.2 6.0 1 23 503 525 503 525 0.98 12 16 1.2e-07 6.1e-06 26.5 0.3 1 23 531 553 531 553 0.98 13 16 4.1e-06 0.00021 21.7 0.7 1 23 559 581 559 581 0.97 14 16 7.8e-07 3.9e-05 24.0 1.0 1 23 587 610 587 610 0.97 15 16 3e-05 0.0015 19.0 0.2 1 23 616 638 616 638 0.98 16 16 0.00011 0.0054 17.3 5.1 1 23 644 666 644 666 0.98
Sequence Information
- Coding Sequence
- ATGGCCAGCGTAGTCATATGCCGAGTGTGTCTCGTCCGCGATATTAGAATGTATTCCATGAACACAAAGCTTAGAAAAACATTTGAAATATTTGCAGGCACTAAACTCAGTACGGAAGATGGAAGGCCCAAAACAATGTGCTACATTTGTTATGCTCAGCTGCAAAGATGCTGTAGGTTCAGGGAAATGACTAAAGCAGCTGACAGTGTCCTGGCGCAGTTCTATGAAAATGGATTTGAACTAAACCAAGAAACATCCAGCTTGTTATTCATAGATAAACCACACAGATTGTCACCAACAGCGGTTCAGCACACCTCCTGTTATGATAATAGCAATTTAGAAGCTGTAAAGGAGGAACAGTCAGATTCAACCGATTACTTTCTTGATTTTGATGACGGGAACAGTGTGAAAGATGAAGTTACTCCTTCATCAAAGAATCACTTACAACAGGCCGAAGATTCTATGAAAACAGTAATTAGTAAGGATCTCAGCGAAGTTAAAACAGAAAACATTGAGGCTCCAAGAACTGAACAGGGCGCTGTCCAAATACCTGTAAACAAAACAGCTTATAAAAGCAACTCCAATAAAATAGAGAAAAATGATATTATTGAAGAAACTCCTCTAGACGGAAGTACTAATTTAAGCTATTTTTGTCCCATATGCAATAAAAAACATGTTACCAAAAAAGCATTGGATCAGCACATGAAGGTACATGATAAAAGTCGATCGTTTGTGTGTGAAATCTGCGATTATCGGTTCAACACAAAAGCAAACCTAAAAACGCACAAGGAAAACCTACACAGAACTGAAAGTGAAACTGTTGCATGCACCGTTTGCCATAAACTTGTGAACAGTCCGCAAATCTTAAAAAGGCACATGAAAATCCACTCTGAAAAACCGCCCagaaaccacgcgtgtgacagatgcgacttgaagttcacagataggagtacattagtgagacacaagataactcacactgaagatatgccagcgaagccgcacgcctgccaaatctgccataaaaccttctcagtgatctattaccttaaaagtcatatgaaacttcacaccggcgaaaagccatattcctgcgaacgttgcggtaaagcgttcacgcttaatagccatttgaagattcacatgaggactcacacgggagaacggccgtacgcgtgcagcaaatgcgataaaagatactcgagcttagctcacgttaaatatcacatgaaaatgcacaccggggtgaagggatacgcttgtgatatatgccaaaaagccttctccgaaagcagtcactggaagagccacatgaggatacacacgggtgaaaaaccgttcgcatgtgatatgtgcgataaaaaattcataggtcacacgaatcttaaactgcacaagaggattcatacaggcgtgaagccgcatgtctgtgacgtttgcggaaaagcgtttgcccaaaagtcggtgctgataatacatgttaggactcacactggggagaaaccgttcgcatgccaccgttgcggcaaaacgtttacaatgtcaacacacctcagaactcacatacgaacgcatacaggtgaaaagccttatgcgtgcgagatttgcggtaaaacgttcgcagaaaacgcccgtttaaaaaggcacatgagaacacacacaggtgaaaaaccttatgcttgtacaatgtgtgataagtcctttgctgattacactaacatgaaaactcatatggtcacccacaccggtgaaaaaccatttacatgtgacaggtgtggtaagacgttcacccaacaaggaactatgaagaagcacatccaaatagtacacttgaaagagagaccgtatgcatgtgacatgtgccctaagacctacgctaaaagccaggccttaaaagtccatgttcgatcccataccggtgaaaggccttttaattgtgataaatgtaataaatcatttacaaGACATGAAATACTGAAACGCCATTTGAAAACTCACTGCGAATCTTTATCACGTTATGGAACTAAGTGCGATAAGATTCTAGGTGGTGAAGATATGATGATGGATGTGGCTGGCAACCAATCCCTGCAATAA
- Protein Sequence
- MASVVICRVCLVRDIRMYSMNTKLRKTFEIFAGTKLSTEDGRPKTMCYICYAQLQRCCRFREMTKAADSVLAQFYENGFELNQETSSLLFIDKPHRLSPTAVQHTSCYDNSNLEAVKEEQSDSTDYFLDFDDGNSVKDEVTPSSKNHLQQAEDSMKTVISKDLSEVKTENIEAPRTEQGAVQIPVNKTAYKSNSNKIEKNDIIEETPLDGSTNLSYFCPICNKKHVTKKALDQHMKVHDKSRSFVCEICDYRFNTKANLKTHKENLHRTESETVACTVCHKLVNSPQILKRHMKIHSEKPPRNHACDRCDLKFTDRSTLVRHKITHTEDMPAKPHACQICHKTFSVIYYLKSHMKLHTGEKPYSCERCGKAFTLNSHLKIHMRTHTGERPYACSKCDKRYSSLAHVKYHMKMHTGVKGYACDICQKAFSESSHWKSHMRIHTGEKPFACDMCDKKFIGHTNLKLHKRIHTGVKPHVCDVCGKAFAQKSVLIIHVRTHTGEKPFACHRCGKTFTMSTHLRTHIRTHTGEKPYACEICGKTFAENARLKRHMRTHTGEKPYACTMCDKSFADYTNMKTHMVTHTGEKPFTCDRCGKTFTQQGTMKKHIQIVHLKERPYACDMCPKTYAKSQALKVHVRSHTGERPFNCDKCNKSFTRHEILKRHLKTHCESLSRYGTKCDKILGGEDMMMDVAGNQSLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -