Basic Information

Gene Symbol
Znf296
Assembly
GCA_963971155.1
Location
OZ020118.1:31209029-31214230[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.003 0.15 13.4 1.8 2 23 190 212 189 212 0.95
2 15 0.033 1.6 10.2 1.5 1 23 295 318 295 318 0.95
3 15 3.4 1.6e+02 3.9 1.3 1 21 331 351 331 352 0.94
4 15 1.2e-05 0.00057 21.0 0.5 2 23 396 417 395 417 0.96
5 15 0.00043 0.021 16.1 4.5 1 23 424 446 424 446 0.98
6 15 0.0001 0.0051 18.0 1.2 5 23 461 479 458 479 0.95
7 15 2.1e-07 1e-05 26.5 0.5 1 23 485 507 485 507 0.99
8 15 6.6e-06 0.00032 21.8 1.2 1 23 513 535 513 535 0.96
9 15 2.2e-05 0.0011 20.2 2.4 1 23 541 563 541 563 0.99
10 15 6.3e-05 0.0031 18.7 0.4 1 23 569 593 569 593 0.92
11 15 2.8e-05 0.0014 19.8 0.9 5 23 808 826 805 826 0.95
12 15 7e-05 0.0034 18.6 3.1 1 23 832 854 832 854 0.99
13 15 2.1e-05 0.001 20.2 3.4 3 23 862 882 860 882 0.97
14 15 4.5e-06 0.00022 22.3 1.3 1 23 888 910 888 910 0.99
15 15 0.00017 0.008 17.4 0.7 1 23 916 940 916 940 0.92

Sequence Information

Coding Sequence
atggaaaaaatacaagaatttaacaatttaaatgaatttaatttaaataaaatatgtcGTACTTGTTTGCAAGTAAGAAATGAAGACgaaatgatttatttatatgatattGAGCCTGATAATCAGAAATCTATTGCCGAGATCATAATGAGTTTTATTAAACTGCAGatacaAATTGATGATCTTCcacaaaaaatttgtaatgagtgtacaaaaaaaattatatcagcctttaaaataaaaaatgatatagaaaataatgaaaCCTTGTTATtagattatttgaataatagAAAAGAAGATTTAAAACCAATTATAGATGATATTAATACATTTAGTGAAGTGTACAATACAGAggataatttaaataatgaaacTGAATTGAAGCCTGAAATTGAGCATAACATACCAGATATATTGAATGTAGAAGATGATGACGAAAACAGTGATTTTGAGTCTAATCATGACGAGGTAGAAGGAAATGGAAATCCTAACTTCGAAGTAGTTATTGTAGAAAAGATTGATAATcttaaacaaaataaaaagaatcgtatcaaaaattacattgagtgtaaaatttgtacttcaaaatttagaaaattttcaaatttaaaatctcATATATATTCTTCACATCAAACGATtgaatcatttaaaaatattgatttagaaaataatgaaattatagAAAGACTATGTCCATCTGGAAAAGATGATTTGGATAAATTAATTAAGTTTATAATATCAAAAttgcaaaaagaaaaattcatgaGATTTTGTTCATTTGGAAATGAATTAGGTGATGAATTATATTTAAGTGATTCTGAAACTGAACCAGAAAATGATGGCGCTGATAATGTAGGTGATAATAAAAAGCCAAAATATATGTGTGAGGTGTGTAATATTGAATTTGATcgtaaatataaaaatttccaaCATCAGTACATATATCATTTACGAGATGATAAAGGAAAAGAACAGAATGATACATATTCATGTGAACCTTGTAAAAAAGAATTCAtatcagaaaaattttatcaatatcatttgaaatttcaatgtgtaaataaaaagCATCCAGTAATACAGAATGCAACTAAACAATCTTCGCGTCTCATACGTAACATTAAATCACGAAAAAAAGTACCAATCATAAAAAAAACTGAaggtgaaaataaaaaactcAATTGTAAAATATGTGGTAGAACATTTGCTAGAACTGTAAATTTAAATGGTCATTTAAAAACTCATAATCcagaaaatcaaaaatatgaatgtaatatATGTCATAAGAAATTTAACCGCAAGATTTTTATGAAATCTCATTTGAAAATTCACGGTGAAAATGAACAATTAGAATCTTTAAAAAAGCTTTGTATATACTGTGGACAAAGATTTTCCAGTTCGTCGAATTTTACAATACATTTACGTCGTCATACCGGTGAAAAACCTTTCAAATGTGATGTATGCGATAAAGGATTCCCAAGTAAAAGCGATTTAACGTCACATCAACGTATTCATACGGGTGAAAAACCATATTTATGCACAATATGTGGAAAAAGATTTGATCgatcaaataaattaaaaacacaTGTAAGAATACATACTGGCGATAAACCATATAAATGTACTTATTGCAATAGTGCATTTACACAATCGAATTATTTAACATTGCATATTCGTCGTCATACTGGTGAAAAACCGTATGCATGTGGAATATGTGGTGAGCgtttttttcaaaattcaacACTTCAAATACATCGCCGGTCGAAAGGACATATTGAAGACGATAATGAAGCTGAAAAACCGATTTCAAGAATAAGCGTTAATTATCCAAATCGTGAAAATATTCTTGAAATGATAAAACCAAAGTTTTTACCAGTTGggcaaaataaaaaaaacgaaaatcaTGCAACATCCACAACATattatttgaataatagAAAAGAAGATTTAAAACCAATTATAGATGATATTAATACATTTAGTGAAGTGTACAATACAGAggataatttaaataatgaaacTGAATTGAAGCCTGAAATTGAGCATAACATACCAGATATATTGAATGTAGAAGATGATGACGAAAACAGTGATTTTGAGTCTAATCATGACGAGGTAGAAGAAAGACTATGTCCATCTGGAAAAGATGATTTGGATAAATTAATTAAGTTTATAATATCAAAAttgcaaaaagaaaaattcatgaGATTTTGTTCATTTGGAAATGAATTAGGTGATGAATTATATTTAAGTGATTCTGAAACTGAACCAGAAAATGATGGCGCTGATAATGTAGGTGATAATAAAAAGCCAAAATATATGTGTGAGAAATTTAACCGCAAAATTCTAATTAAATCTCATTTGAAAATTCATGGTGAAAATGAACAATtagaatctttgaaaaatcTTTGTATATATTGTGGACAAAGATTTTCCAGTTCGTCGAATTTAACTATACATTTACGTCGTCATACTGGTGAAAAACCTTTCAAATGTGATGTATGCGATAAAGGATTTCCGAGGAAAACAGATTTAACATGCCATCAACGTACTCATACGGGAGAGAAACCATgtttatgtacaatatgtgGGAAAAgATTTGATCGTTCGAACAAATTAAAAAGACATGTGAGAATACATACTGGTGATAAACCATACAAATGCACTTATTGTGCCCGTGCATTTACACAGTCGAATGATTTAACATTGCATATTCGTCGTCATACTGGTGAAAAACCGTATGCATGTGGAATATGTGGTGAACgatattttcaaaaatcaaCACTCCAAACACATCGTCGTTCGAAAGGACATTTTGAAGACGATAATGAAGCTGAAAAACCGATTTCAAGAATAAGCGTTAATTATCCAAATCGAGCAAATATTCTTGAAATGATAAAACCAAAGTTTTTACCAGTTGGACAAAATAGAAAAACCAAAAGTGATATAACATCCACAACATGTAACGATACAACATCTCTAACATCTTGA
Protein Sequence
MEKIQEFNNLNEFNLNKICRTCLQVRNEDEMIYLYDIEPDNQKSIAEIIMSFIKLQIQIDDLPQKICNECTKKIISAFKIKNDIENNETLLLDYLNNRKEDLKPIIDDINTFSEVYNTEDNLNNETELKPEIEHNIPDILNVEDDDENSDFESNHDEVEGNGNPNFEVVIVEKIDNLKQNKKNRIKNYIECKICTSKFRKFSNLKSHIYSSHQTIESFKNIDLENNEIIERLCPSGKDDLDKLIKFIISKLQKEKFMRFCSFGNELGDELYLSDSETEPENDGADNVGDNKKPKYMCEVCNIEFDRKYKNFQHQYIYHLRDDKGKEQNDTYSCEPCKKEFISEKFYQYHLKFQCVNKKHPVIQNATKQSSRLIRNIKSRKKVPIIKKTEGENKKLNCKICGRTFARTVNLNGHLKTHNPENQKYECNICHKKFNRKIFMKSHLKIHGENEQLESLKKLCIYCGQRFSSSSNFTIHLRRHTGEKPFKCDVCDKGFPSKSDLTSHQRIHTGEKPYLCTICGKRFDRSNKLKTHVRIHTGDKPYKCTYCNSAFTQSNYLTLHIRRHTGEKPYACGICGERFFQNSTLQIHRRSKGHIEDDNEAEKPISRISVNYPNRENILEMIKPKFLPVGQNKKNENHATSTTYYLNNRKEDLKPIIDDINTFSEVYNTEDNLNNETELKPEIEHNIPDILNVEDDDENSDFESNHDEVEERLCPSGKDDLDKLIKFIISKLQKEKFMRFCSFGNELGDELYLSDSETEPENDGADNVGDNKKPKYMCEKFNRKILIKSHLKIHGENEQLESLKNLCIYCGQRFSSSSNLTIHLRRHTGEKPFKCDVCDKGFPRKTDLTCHQRTHTGEKPCLCTICGKRFDRSNKLKRHVRIHTGDKPYKCTYCARAFTQSNDLTLHIRRHTGEKPYACGICGERYFQKSTLQTHRRSKGHFEDDNEAEKPISRISVNYPNRANILEMIKPKFLPVGQNRKTKSDITSTTCNDTTSLTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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