Basic Information

Gene Symbol
Trerf1
Assembly
GCA_963971155.1
Location
OZ020117.1:15003808-15025940[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.4e-08 0.00014 22.8 0.1 3 45 1342 1384 1342 1385 0.95

Sequence Information

Coding Sequence
ATGTGCAGTGCTTCAATGGGTGCTGAAGGTTCAGTAACGCTTCAATTACGTGAAGCTGTTCAAGCACCTGATTCTGGTAGTTCTCTAGATACAGCCTTAACAATTGGATATCCAGATCCAGAAATATTAGCTGATGTTTTGGGTACCTTACAAGCTGcagctttaaataataataacaacacAACAACGGTGGTAAATACTGGAAATAATTGCAATAGTAGCCTTACAAATATGAAAACTCAAACtacaaatcaaaataatattatttcGAATGTTTCCACCAATACTTCTTCCACCAACAATAATAGTCCTATAAatattagtaataataataataataataataataataatgttaataataataataacaataataatattaataataatattaatagtaacaacaacaatattaacaataataataatggtagTAACAATAGTTGTGGtaacaataataatagtaaCAATAACAGTAATAATAGCAATACCAGCAACAGCAGCAGTAGTAATAGTAGTAGCAGTAGTTGTTCCAGTGAGGGTTCAGTTCCTGCATCAAATCCACCGATTGTCGTTAAAAAACCTCGGCCTAAAACTTCATCACCTACGCGTCATGGTCCTCAACAATGTCAGGTTTGCAGTAAAATATTCGGTAATGCATCAGCATTAGCAAAGCATAAATTAACACATAGTGATGAAAGAAAATATGTTTGTGCAATGTGTTCAAAAGCGTTCAAAAGACAAGATCATTTAAATGGTCACATGCTGACACATAGAAATAAGAAACCTTATGAATGTAAAGCAGAAGGTTGTGGAAAATCATATTGTGATGCCAGGTCATTAAGACGCCATACAGAAAACCATCACGGTTCTCTTGGAATGACACCTACAACCCCAAATCAATCACTGTCACCATCGCTTGGACCACCAACTGGGCTAAGTTTATCTCCGGCCACCGCAAGTGGTGATGCTAGTTCACCTCATGGAGCTACCTGTATACAGTACATTAACAATGGCGACCTAACAAATTCAAAGCCATCATCACCTAGTTCACCAGCTGGTGCTGGCAATGAAGGTCTTACTAGACAACAATTGGATCTCATTAGTCAAATTATGCAACAAACTAAACAAGCTACAGCACAAGTGACAGTTTCTACAAATAATGGAAATGGATTAAAAAATCAGCAACAATCACAAAGACCACGAACATGGAATATGcagACACAATTACAACAAACTCAATCGAAATCGTCATCAGTAGAGTCAGTTGGCACAATTACAACTACAACATTCGGGACAACTGGATGTAATTCAATTAGTAATAGCAACAACAATGGTCAACAAATTcagcatcatcatcatcaacagCAACAGCACCATCAACAAACACAATCATGTAATTCAATTAATTCACAACATCAACAAATtcagcaacaacaacaacaaccacAGCAAATATCTCACGCcttaaatataattaaagtAGAACAAAAGCCTGTCGAATGCAATTTGTGCcatagaaaatttaaaaatattccAGCATTAAACGGTCATATGCGGTTACATGGTGGCTACTTTAAAAAGGATACCGAAACgaaaaaatgtgaaaaaaaagaatcttCTGGGCCACCACTACAAACAGCTAGTATTGGAGTTAGAGCTTTAATTGAAGAGAAAATAATCAGTAAAAGAAGTAAAGATTTAAAGGGTGCCTTTGTAGTTCCTGCCCCTCCTTTATCATCAGTGcgaaaaattgaaaatagtGAAAATAGCTTTTTAGCACCGAAAACGCCTATACAGTTATCAACGGCAGGAACAACTTCTGGGAcaataacaaatttaattcAAGGACCTTCTGGTACATCAATTCAACTTCAAAAACAGAACATTCAAAAAGTTACAAGCGTGGCTACATCAACACAGAGTGCCATAACGGATAATAAAGACGCTACTTTGATTGAGCTACTAAAACGAGGAACAAAAGTTGCAGTAAAGAGAACATGCTCAGATCCAGGTCACATTTATGCAACCAATAATTCATCTACTATTGTTTTGCCGTCGGATCCATCTTTATCTGCTCCAAATACACCGAATCCAACTCCACCTTTAGCTATATCACTTCCAGGAGAATCAACTCCCTTAGCTCTTACAATTTCACAAGCTCCGAATGGTTCTGGAGATGTTTTCACATTAACTTACTCCGCTGACTCTTCAACAACATATTTTGGAGATTCAGATGTATATAGTGTCTCAGATACCGCAATGCTTCTGCAAGCTGTAGATTCTATACAACTTTTAAATGATTCCACAACAGCCGAACAATTAGATGAAATCGCTTCACTAAGTGAATATTCTCTAAGTGCAGATAATAACACAATCACTGATGTCAACAGTTTAAATCAAGAATTTTCCACTTCTTCGAAACAATTACAAACTATTCTCAATTCACCACTTCCAGAAGGTTTGGCTGATTTTAGCACACTTCATTCCAAGGACTATGTCCTATACAATTGTACTAATAATGCCTCTCCGGCAACTCAATCTTCGGCTTCACCATTGCCTTCACCTTTAGCTTATCCTACTCCTCCAGCAAGTCATGAAGCTGTAACTCAATCTTCGCCATTTTTAGACGATTCACATCATTTTTCCGAAACGAATGCTTTCTTTGATGAGAAAACTAATAATAACTTCATCGATGAAAACAAcagtcaattttttaaaagtacGACAGATGCTGATTTAAcagaaaacgaaaaaatacTTAAACTTAAAAATGAACTTTTTAACGAGAGTAAAAGTGTGCTTGAAGTcaatgataatttttttaaatctgaAGACACAAGCGATGTTTTCGATAATCCTGTTAAAGTCGAAGATTTATtaaacgaaaataataatgaacCTTGTGATCTTAAAGATTTTTCTACTCAAAATCTTTCATTCCTAGATGAACCACAAAACTTTCTTGATGATGCTAGAAATCCCCCTTCACCACTTTCTGAATCATTTTTCACAAGTGCCATAACAAGTGCTGAAGAAGTTAAAGAAGCTTTAAAAGACGTATTGCCCAACGAAACATTAAAtagtgaaaataataatacaaatgaTATTGATTTATATTATTTACCGGGTTTAACTCTTCAGTCACAAATGATGCCTAATTCAGATGACCCTTTGTTATCATCTTCGCCTAAGGATTTCATTCAAAGAGTACAACAGCCTCAGCAACAGATGCAAATACCATTAAACCAAATCAAACAGGAAGTTATGCAAGTCTATAGCATTCCAAATGCAAAAAGACCTCGAACAAATGAAGATTTGAGTTCGATGAATACTGTTCAAACACAACAGCAAATTGTTCAAATTCAGCAGGCCAATGTCGATCGACTTATCAATGATTCGATAAACTATAACAATCCCACATTAAATTTGTCTCATTCTTCTGGAACTTTCGTAACTGCTGCAACCTCTACACCACTTGCACGTTCAAATTTTCATCAAACATTTACAAATTCTATTTTGAAAAGAAGATTACGTCAAGGACAAGTAAAAAAATCTGAATGCTTTCGGTCAAAACTAAGAAAACCTTCAACTACTCATTACACTCCATCTCCGATTTTGAATCCAGATCGAAAAGCACCTGGGCTATATTCCAACCTACCGAAATCAATATTGCAGGACACTATAGATTTGGTAGATGAATTTGATGATACCGCTAGTCTTGTAGCATTCCTTGACGATTCGAAAGTAAATATTGGTACAGCATATCAAGCAACTATTCCTTCTGCTGGACAGAGTTTAAATTATGAAAGTGAAAAATATGATGAGTTGATGTGGGATCCAAATATGGCACccaatgaaaaattattaaccAGATTCATTGAACTGAGTAAATCTTCAGCAGTACCATTAGGATTTCATTCAGAAGAAGTAGCCTTAAAGGCACTACTTGACGCTAACGGTGATACGCATATAGCTGTTCTAAATCTACTTCAAACACCATCTGAtcatgtacattttaaatggTCAACAGATCAAATTGAAGCATTCCTCAAAGGCTTAGAGAGACATGGAAAagatttttacaaaatatcaAAGGAGaTATCTTTGAAAACCTCTGGAGATTGTATTCAGTTATACtatttttggaaaaaattaTGTGCTGATTATAAAATTACTCATTTGAAACAAGATTCAGACTCATCAAATGATAGCCAGTTATTACACAGTTCACATAATTCGGAAGCACGTCCTCATGTTTGTGAAATGCCAGATTGTTCAGCAAGTTTTACCTCGAAGGCAGCACTTCATGGACATACACGAATACATTGCATCGGTAGAAATATAAATCATTTGGGAAACAACAATCAAATATTAGGACATACATCCTCTTCTCTGCATGGTACAAATATTAAAGATGATTTCCCCTGCAAGGTGTGCGGCAAaGTGTTCAGTAAGGTGAAAAGTCGTAGTGCACACATGAAATCCCATCGACCTCAGGAAAATGATCCTAGCACTAATTCctaa
Protein Sequence
MCSASMGAEGSVTLQLREAVQAPDSGSSLDTALTIGYPDPEILADVLGTLQAAALNNNNNTTTVVNTGNNCNSSLTNMKTQTTNQNNIISNVSTNTSSTNNNSPINISNNNNNNNNNNVNNNNNNNNINNNINSNNNNINNNNNGSNNSCGNNNNSNNNSNNSNTSNSSSSNSSSSSCSSEGSVPASNPPIVVKKPRPKTSSPTRHGPQQCQVCSKIFGNASALAKHKLTHSDERKYVCAMCSKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHGSLGMTPTTPNQSLSPSLGPPTGLSLSPATASGDASSPHGATCIQYINNGDLTNSKPSSPSSPAGAGNEGLTRQQLDLISQIMQQTKQATAQVTVSTNNGNGLKNQQQSQRPRTWNMQTQLQQTQSKSSSVESVGTITTTTFGTTGCNSISNSNNNGQQIQHHHHQQQQHHQQTQSCNSINSQHQQIQQQQQQPQQISHALNIIKVEQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTETKKCEKKESSGPPLQTASIGVRALIEEKIISKRSKDLKGAFVVPAPPLSSVRKIENSENSFLAPKTPIQLSTAGTTSGTITNLIQGPSGTSIQLQKQNIQKVTSVATSTQSAITDNKDATLIELLKRGTKVAVKRTCSDPGHIYATNNSSTIVLPSDPSLSAPNTPNPTPPLAISLPGESTPLALTISQAPNGSGDVFTLTYSADSSTTYFGDSDVYSVSDTAMLLQAVDSIQLLNDSTTAEQLDEIASLSEYSLSADNNTITDVNSLNQEFSTSSKQLQTILNSPLPEGLADFSTLHSKDYVLYNCTNNASPATQSSASPLPSPLAYPTPPASHEAVTQSSPFLDDSHHFSETNAFFDEKTNNNFIDENNSQFFKSTTDADLTENEKILKLKNELFNESKSVLEVNDNFFKSEDTSDVFDNPVKVEDLLNENNNEPCDLKDFSTQNLSFLDEPQNFLDDARNPPSPLSESFFTSAITSAEEVKEALKDVLPNETLNSENNNTNDIDLYYLPGLTLQSQMMPNSDDPLLSSSPKDFIQRVQQPQQQMQIPLNQIKQEVMQVYSIPNAKRPRTNEDLSSMNTVQTQQQIVQIQQANVDRLINDSINYNNPTLNLSHSSGTFVTAATSTPLARSNFHQTFTNSILKRRLRQGQVKKSECFRSKLRKPSTTHYTPSPILNPDRKAPGLYSNLPKSILQDTIDLVDEFDDTASLVAFLDDSKVNIGTAYQATIPSAGQSLNYESEKYDELMWDPNMAPNEKLLTRFIELSKSSAVPLGFHSEEVALKALLDANGDTHIAVLNLLQTPSDHVHFKWSTDQIEAFLKGLERHGKDFYKISKEISLKTSGDCIQLYYFWKKLCADYKITHLKQDSDSSNDSQLLHSSHNSEARPHVCEMPDCSASFTSKAALHGHTRIHCIGRNINHLGNNNQILGHTSSSLHGTNIKDDFPCKVCGKVFSKVKSRSAHMKSHRPQENDPSTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00119005;
90% Identity
iTF_00119005;
80% Identity
iTF_00119005;