Basic Information

Gene Symbol
JARID2
Assembly
GCA_963971155.1
Location
OZ020120.1:21327065-21333788[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-22 1e-18 68.3 0.0 6 89 1536 1617 1531 1617 0.93

Sequence Information

Coding Sequence
atgGTTATATCAAAAGATGGTAAACGAAAACGTAAAGATTCACCAGCAATGGAATCATCTCCAGAGATGCCTAAAagGACCAAAGTTCAGGCGCAGAGAAAATTTGCACAGGGACAGTCAGCACCATCAGCCTCTTATTCATCAGTGATTCCGACGTCATCGGCAGCAACAAGTGTAAATTCTCAACCAGGTACACCAATCCGAGAAAATCGTGACCCACCACCAGAATTTATAACACATAAAAGACCACGTACTGaagattttttaacatttcttTGTTTTCGTGGTACATCAGTACTACCATCACatttagattttttaaatcaaaataaaaattcatcatCACCATCAACATCAAAAAAGGACGGTAATAATGAAGACGAAGAGGCAACAACGGTTAGTTCCACATCAAAAGCAAAAGCATCAACTAGTAAAGAAAAAGAATGTGTCTCTGTACctgaaaaggaaaaattaacAGAAGATAAAACTCAAAAACAACCAACCATAATACCGTTTGCGGTGAGGAAACGAGCTGATCAAGTAGCTGAAGGTAATCGAAAAGcatcaaaattaaaagaaaaagcaaaaaagGAAGAAACAAACCGTAGATCTTTAAGGACAAGAGGAAACAAAACTGATACACATGAAGATGGAAATGAGGATGTCACAAAAGAAGATGTACAAGACACTACAAGTGTTAAAGCGCAGGAAGATAAACCCTCTGAAATTATACCAGAAACAAAAACTactaaaaagaaaacaacaacaaagGAATTGAAAAAAGCTGCAAAAGAAAGAGAAAAGGAAACTATAAAAACCACTATTGATAGCAAAAATGTGAGTGAAAATGATGAAGAAAGGAAAACACCTTCTGAAAAGACGACAAAATCAACGAAATCGGCAAAAGGAAAATCTCGTTTGGCTGCTTCACCTCCATTGATTCCATCACCACAGCCAGGTGGTCGTATGACTAGGCAAAGAGCGTTTTTTGAACCAGTGAAGCCACCTTCAAAAGAATGCGAGGAAGATACAAATTTAGAAGACTCAAAAGTTCAAGAGCATAATACAGAATTTTCTTCAGATGACGAACAACCATTGGCTAAAGCCATTAAATTAACTAAGCGCGTTGGAAGATCCCCAAAGAAAACAGTCAAGGGTAAAAGAAAGAATGACGCTGACACATCGGTTGCATcaaaaacaaagttaaaatCTCCGTCTCCATCAGTAAACAAACGTGCAGCATCTAGAGCTTCCAAAATGAGTGAACAGCCATCAGaaaaacaacaagaaaaatCAGTAGATGTGTTAACCGAAAAATCGGACAAAAGTTcgaaaaaaggaaaaaaaccGAATGCAAAGAAACGAGCTGAATCGATTGGGCGTAAATCAGATACAAGTTCAAAATTGTCTTCTTCAAACAAACAAGTCAAACAAGCGAAGAagaatttaacaaataaaCGAGGAAGAGCACCTAAGTCCACAACGAAAAATACCATTGATAAAGAAAGTGCAGGTTCTTCACCAAAGAGAAAATTAGTTAAAAAATCACCTGATCCAAATTTCTCTCAGAGATCACTATCGCAAACAGATATCAGTGAAAACGAGAATCGTACTGCAAGACCAACAAGAAAGACTAAGGAGGCAGCTACAATTTATATGGAATTAATTGGTCAAAAATTAAGTTTGGATGATTTCGATGATGACGACAATTCAATTGATAGCTTCCCAGAACTACCAAATGCAAAGAAAGCacaaaaaatggaaaatgaattaaggaaaaatttaattaaaccCAAACAACAGAAAGCAAGAgttaatagaaaaaaagataaaacGGCTGCAAAAAACGACAATGCGAAGGATGTAGATACAATAGAAACTACATCAAGGTCATCAGCAAAACAAAAAGACTCATCAATTGACGAGAAAATACACGCAGAACTTAAGCAATTAGAAAAAAGTTTCAGTGATTCTGACGATGAACCACTAGCTACAAAAGTTAATAAACCAAATGATGAATTCGATGATATAATGTATGAAAACGATGCAGAACCCACCTTTTCAAAAAATTTGGATATTAAAACTGAATTAGAACCAGTTAAAATTCAAAACGAACAGGAGCAAATTCACCAGCCATTTCCCATCATTACAAATGATTCCAAAATAACAATTTCACAGGGTAAAGATATAAAAATCGAAAATACTGAAAAGGTAGAGAAAATTCAAAAACCGAAATTAAAAAGTCCATCACCAACAAAGCAATTACCGGTGAAACAAACTTCAAAAGTTGATAGTATGCTAAAATCAACGACGACAGCATTATCTTCGCCGTCAACATCGACTGCATTTCCTGTTTTAGATAGATATCCATCACCAAAGGTAAACCCGACATTTTTAACTCCGAAATTTGATAGAAATTTGGCTGAGAGACGTGCATTACCCGACACAAATGTTACATCAACTACACTTACAACAAAAACTAATTTGCTTAATCCATCTCCAGCAAAAGTAGATGTTCCAGTTACAACAAAACCTCCATCTCCAAGTAATTCATTATCAAACACAAAGAAATTTGATACAACAGAGAATATTCTGGCTGCAAATTTAATGCCAAGTAAAGAGGAATCCGGAAAAATATTTGGTATAGCAAGTGTAAGTTTAGCTCAGAGTTCTGGGCCAGATAATACGAAATGTACTCTAGGAAAATGTGGATCTATACACAAACCTGTCCTAGGTCCTGTAGTACCGACGGAAGCGTACCTTGGCGAACAGCTATCGAGTAAGGAGCGACGTAAAGCGAAAGTAAATATGACTCATgaacaaatacaaaaatggTTGATTGAATGCTCTTCGAATCCTGATGAGATCCAAGATGATTTGGATGATGACTTCGATTATCCATTGAAACCAATGACATTTCCACCGTCCCCACCACCATTTAGGGACGAGAAAGAATCGACATCACATAGTTCATCATCAAAAACTACCAAGGATAATGTAAAAAGTGAAAGTGCTTGGTCTGGAAAAGGTCCTTCACTAAAAGCCACACCAGTAATTAAAGAAGAAACGAAATCATCGTCATTATACAATGAAGCTATAAAAGTAGAAAATTCGTTTGATTCTCCAAAAACGCAAAAACCAACTGAACAAAAGGTGAAAGATTTTGTTGATGGCAATTTATCAGAAACTCCTCCAAAATCACAAATACAGCAAATTAAAGCAACTACAGAACCTGTAAAATCTCCAAAACCTTCTGCTTCATCAACGACAACATCCTCACCTAAACATCAAAAAGGGACAAGTATTAATTCACCAAAATCACAGAAGACCTCAACAAAAGAGCAAAAAACACCGCctcaacaaaaacaaaagacCAATCCACCAGTTTCACCTAAAAAGAATTCCACTGTTGCTACTGAACAGAAAAAACCGCAACCAGTGAAGAATGTGAAACGCCAACCCGTATACAGTAAAGTATCTGAACCAACATCAAAGAAGAAAACTCCAGCTACCACTTCTACAACAGCTACAAACAGCTTTTTGGCTTTTTCAGCAGAGAATGAAACGAGTGTGTATTCATTTGATAAAGAAGATGACGTCCCACCACCGGTTGCTAAACCTTTTAGACGACATAGCAGAAGGGAGTCTCATCACGAAGACACCTCTCAGACAGAAAAAACGGCCACAAAAACATTAGATAATGATGTATCAGAGAAAAAAGGAGCTGTCACAAAAGATATCCAACAAAATAGTATTTCAGTAACTTTGAGCCCAGAAGAAAACAGTAAATTGGTAAAAGTCAGTTTAGATGGTGTTGAAAATCCTACGAAATCTTCTGATAAAAGTCAAAATAACGAATTCGCTTTGGGTGATTCGGATTCTGAGGGTCATACATTCTATATTCCTTTACAAGGTATTGGAGCTACAGGTTCTACTGGTGGAAAGTCAGATCTTATTCAAGGAGTAGCCGTAAAACTTGGACGTGAAGGACCAGAGGGACCAAATCAACGTGTCATAATGCACGCAACCTTAGTTACAAAAGCTCAAATGGGTTCGAATACCACTCCAATACCAGAATCGATGAATGTTCATGAAATTGTCAAAAGCTTGTTATCATCTAATAACAAGGAATCGTCGTCCGCAGCATCAGTAGCATCCAAGAGCGTACCAGTTGGAACTGTTCAACCTCGTTTCAAATCAGTGACAGGTGATTCACAAAATCCATCTGGTTCAAATTTGACACGAGTTAATTCAAATTCATCATTGTTCTCTGGatcaaataaatcaaaaacaaCATCGGCTGGGCCGAAAAAGATCAAAAATGATATACCAATTAAAATGTGCAATAATACGGCGTTTCCTCGTCACGATGATCCGTCACAAATGGTCGAAGCTCCTGTATTTAAACCGACTGAGAAAGAATTTCTCGATCCAATCGAATTTATTGAACGTATCACTCCGATAGCAGCTCGTTTCGGTATTTGTAAGATCATACCACCAGCTAGTTTTAAGCCAGAATGTCGGGTTTCTGATGATATGCGCTTTACTGCTTACAatcaatatgtacataaaatgcTGCATCGATGGGGACCAAGTGCTAAAGAACTAAgtgcaataaaaaaatatttagcTACACAAAGTATTGCTATGAATCATCCACCATGGATTGGTGGTATGGAAGTTGATCTGCCTCGTTTATATCACACTGTTCAAGAACTGGGAGGATTGAAAGAAGTCATCGAAAAAAAGAAGTGGGCAAGAGTGGCAGAAGAAATGTGCATTCCAAAATTAGCTCAAGATCGTTGTACAAAATTAGATGATATTTACTGTAAATATCTCCTTCCTTATGATACATTATCACCTGCTGAACgacaaaaattatttgatgAGGTTGAAGCCGATTGGGCAAAAAGAGAAGCACGAGCACGTAGAAATGCAGATCGTTGTGTTAATCCTGAAAGTGTAAGTAACGAAGATGATGGTGCTTCCAGTGAAGATGAAGAAGAATCCGAGGAGGAATTAGATGGAGTTTCAATGGAATGTATCGTTAAAGGGCGTAGTATGCCGTTAAATCAGTTTTTCCGAATAGCACGAAATACAATGGCTGTGTGGTTCAAAAACACAGAACCAACGGTAACTGATATTGAGGCTGAATTCTGGCGACATGTAGCAGTTAGAGATAGTCATGTTTGTGTTCATTCCGGTTCAATTGATTCTAGTGGTTGGGGCTATGGATTCCCTACACCTGGTCCAAAAGGGAAAGGATCAATTTGCGCTAAGCATCCATGGAATTTGAAAGTATTAACAAATAATCAAGGTTCCGTACTTCGATCGCTAGGGCCAGTGATGGGTGTTACAGTACCAACCCTTCACGTCGGAATGTTATTTAGTGCATGTTGTTGGTATCGTGATCCACATGGTCTTTCTTGGATCGAGTACTTACATACTGGAGCTAGTAAAATATGGTATGGCATTCCAGATGAACAAAGTTCAAATTTTCGTTCAGCACTTACCTCTTTAATACCAACACATTGCCAGAATAAAACCATTTGGTTACCATGTGATACAGTCATGGTACCCCCTCATATGTTAACTGATAGAGGAGTATCACTTTGTCGAACTGAACAAAAGCCAGGCGAATTTGTTGTAGTTTTCCCTAGAGCGTACACTTCTAGTGTAGCAACAGGTTATGTTGTTTCAGAGAGTGTTTATTTTGCTACAAGTAATTGGCTTTTATCTGCCAAAGATGATTTTAAGgATATACATGATAGCTGCGAACCAGCAATGTTTTCATTAGAACAATTGTTATTTGCAGTCGCATCTGATCAACGGGTTTCAAATGATATTTTATCACAAATTTTACCAATGATGCAAGAAGTTTATGAAAAAGAAGTAGCTGCACGACAACAATTAAAAGCAGCTGGTGTTACGTCAACAGAAAAATTAGAACAAAATACACCATCAACTGGTAAATCACGACAAAAAGCTCAATATATACGTGAAGAGCATGAATGTGATTTATGTAGAGCTAATTTATACATATCGATGATAAAAACAGATGATGGTAATTTATATTGTTTACAACAcgcattaaaaaatataaataatggTAATGTACCACCAAAACAATGTAAgttaatatttacatataatattgaTGATATTGAAAcgttattaaaaaaattgaaagaacGTTTAGCACAAAAGAAATCTGTGACAGCTGGTGGTAATAGTAGTAACagtaaaaaatcaaaatga
Protein Sequence
MVISKDGKRKRKDSPAMESSPEMPKRTKVQAQRKFAQGQSAPSASYSSVIPTSSAATSVNSQPGTPIRENRDPPPEFITHKRPRTEDFLTFLCFRGTSVLPSHLDFLNQNKNSSSPSTSKKDGNNEDEEATTVSSTSKAKASTSKEKECVSVPEKEKLTEDKTQKQPTIIPFAVRKRADQVAEGNRKASKLKEKAKKEETNRRSLRTRGNKTDTHEDGNEDVTKEDVQDTTSVKAQEDKPSEIIPETKTTKKKTTTKELKKAAKEREKETIKTTIDSKNVSENDEERKTPSEKTTKSTKSAKGKSRLAASPPLIPSPQPGGRMTRQRAFFEPVKPPSKECEEDTNLEDSKVQEHNTEFSSDDEQPLAKAIKLTKRVGRSPKKTVKGKRKNDADTSVASKTKLKSPSPSVNKRAASRASKMSEQPSEKQQEKSVDVLTEKSDKSSKKGKKPNAKKRAESIGRKSDTSSKLSSSNKQVKQAKKNLTNKRGRAPKSTTKNTIDKESAGSSPKRKLVKKSPDPNFSQRSLSQTDISENENRTARPTRKTKEAATIYMELIGQKLSLDDFDDDDNSIDSFPELPNAKKAQKMENELRKNLIKPKQQKARVNRKKDKTAAKNDNAKDVDTIETTSRSSAKQKDSSIDEKIHAELKQLEKSFSDSDDEPLATKVNKPNDEFDDIMYENDAEPTFSKNLDIKTELEPVKIQNEQEQIHQPFPIITNDSKITISQGKDIKIENTEKVEKIQKPKLKSPSPTKQLPVKQTSKVDSMLKSTTTALSSPSTSTAFPVLDRYPSPKVNPTFLTPKFDRNLAERRALPDTNVTSTTLTTKTNLLNPSPAKVDVPVTTKPPSPSNSLSNTKKFDTTENILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEAYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDYPLKPMTFPPSPPPFRDEKESTSHSSSSKTTKDNVKSESAWSGKGPSLKATPVIKEETKSSSLYNEAIKVENSFDSPKTQKPTEQKVKDFVDGNLSETPPKSQIQQIKATTEPVKSPKPSASSTTTSSPKHQKGTSINSPKSQKTSTKEQKTPPQQKQKTNPPVSPKKNSTVATEQKKPQPVKNVKRQPVYSKVSEPTSKKKTPATTSTTATNSFLAFSAENETSVYSFDKEDDVPPPVAKPFRRHSRRESHHEDTSQTEKTATKTLDNDVSEKKGAVTKDIQQNSISVTLSPEENSKLVKVSLDGVENPTKSSDKSQNNEFALGDSDSEGHTFYIPLQGIGATGSTGGKSDLIQGVAVKLGREGPEGPNQRVIMHATLVTKAQMGSNTTPIPESMNVHEIVKSLLSSNNKESSSAASVASKSVPVGTVQPRFKSVTGDSQNPSGSNLTRVNSNSSLFSGSNKSKTTSAGPKKIKNDIPIKMCNNTAFPRHDDPSQMVEAPVFKPTEKEFLDPIEFIERITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIAMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRCTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRCVNPESVSNEDDGASSEDEEESEEELDGVSMECIVKGRSMPLNQFFRIARNTMAVWFKNTEPTVTDIEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPTPGPKGKGSICAKHPWNLKVLTNNQGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKIWYGIPDEQSSNFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRTEQKPGEFVVVFPRAYTSSVATGYVVSESVYFATSNWLLSAKDDFKDIHDSCEPAMFSLEQLLFAVASDQRVSNDILSQILPMMQEVYEKEVAARQQLKAAGVTSTEKLEQNTPSTGKSRQKAQYIREEHECDLCRANLYISMIKTDDGNLYCLQHALKNINNGNVPPKQCKLIFTYNIDDIETLLKKLKERLAQKKSVTAGGNSSNSKKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-