Basic Information

Gene Symbol
stc_1
Assembly
GCA_951804975.1
Location
OX638115.1:26128865-26133376[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 1.2e+05 -4.4 1.6 15 19 554 558 553 558 0.81
2 16 0.17 1e+04 -0.7 0.3 4 10 587 593 586 593 0.94
3 16 2.6e-05 1.6 11.5 14.9 4 19 604 619 602 619 0.93
4 16 3.4e-07 0.021 17.5 17.0 1 18 655 672 655 673 0.97
5 16 1.5 9.3e+04 -3.7 0.6 6 10 701 705 700 705 0.88
6 16 1.6e-08 0.00096 21.8 10.4 1 19 711 729 711 729 0.98
7 16 1.1 6.4e+04 -3.2 0.7 5 10 758 763 758 763 0.94
8 16 2.4e-06 0.14 14.8 12.5 4 18 776 790 769 791 0.86
9 16 2 1.2e+05 -4.7 1.6 5 10 820 825 820 825 0.90
10 16 0.00058 36 7.2 8.4 1 11 831 841 831 842 0.97
11 16 2e-10 1.2e-05 27.9 13.8 1 19 858 876 858 876 0.98
12 16 0.55 3.4e+04 -2.3 0.0 6 10 905 909 905 912 0.90
13 16 2 1.2e+05 -13.0 16.2 10 19 922 932 909 932 0.67
14 16 2 1.2e+05 -4.5 2.2 9 18 950 962 949 963 0.56
15 16 4.4e-07 0.027 17.2 13.6 1 16 968 983 968 994 0.85
16 16 0.00015 9 9.1 14.7 1 18 1000 1018 1000 1019 0.93

Sequence Information

Coding Sequence
ATGGCCACTTGGGATGGTTCTTACTCTGGGCCAGATGATCAAAATTATTACGTATATTCCGATCAAAATGTTCCTGAGCCAGCGACAGAAAACTGGGCATACTTTCCCAATAATataagtaataattatttacaatcTAATCGTGAGTTCTATGTACAAAATGAGCCCATATTTGAGCAAAATTGCCCAAGTACTTTCTATCATTCGAATGCAAATGTCATGCCAAGTTTATTATCAACAGCTAACAATTATCACGACCATTTAACAAATCCGATAGATAACACACAAATATTGAATAATCAAGAATACTTTCCAAATGTAGTTAAATCTCAACCGTGTTATGTACCTGATGTTTGTTGGAAAcatgattataattttaaaaagaacaaGACTAAATATAATTCAGCTAGAGGAGTTAAAGAAGCTACAAGTACAAAATTGCACGCTATGGCTGAAGAGTTTGTGCCAAATAATACAGAATCTGTTAGTAAGACTCATGGATCAGAAAATACAAAATCTGCTAATATTGCAGATTCTTGTATCAAGGATAACGATAGATCagacaaatatttcttttgtaataCAAGTAGACCTGAAAggaagtataataataaaaagaatttcaatcATAAATCTAAAGAAGGACAGCAAGATCAGTTTTATAAGAGGAATGCATATGCAAATTCTTATCAGCAACCAAGCAAACCTAATAAATTTCAAGGTAACAAGTACTACATTAACAAGTATTATTCAAGTAAACCACAAGTAGATGCAGACATGGCAAATGAGAGTGCATTGAATAATGCAACAAATGATAGTActgtttgtaataataaaaaggtTTCTATGCCAAATTTCTATAAGGGAGAATCATCTTCAAATATGGatgtaaatttgaataaaaataaagatttttcaaaCGAATGCAACGTTCAAAGAACTATTACTGCCAATGATGGTAATACACAAGATGCTGGTATGCAGCAATCTAATGATCAGATCAAGGAATTCACTTATTATAATTCTGGTTTAAAACCATCATCCAGTAAtcacagaaatataaaaaaatatcaatataaTACACGATACAACAAGGAGGAAAGTTTTTATAAAGAGAAAAGACGTAATTATCAGGGATACAATAGAGAGAATTACAGTAGAGAGAATAAATCTAAAGTAAAAGGTCAAATGTACAGCAATGGAGAGCGTAatgaatttaaagaatattctaATGGGGACACTGGACTGGAAGTAAAAGatatgaaagaaaagaagcatAATTATCAAGGATATAACGGATTTAAAGAACACAATAAGGAAAGTAAAGCAGAAGTGTTTGAAGAAAAGGATAAAGGTAAAAATTATATGTTTGAAAGCAAGGAAAAAGGATATGAGCATTGGaggaatagaaaagaaattaatgaaaagaaTAGCATACAAAAACGAAGACAGAGTAAAAAATCACTAGTTGACGATGATGCTAGTCAAAGAGAAAGATTAACAGATCAGCTGAATAGAGGACAATTAGAATGTTTAGTATGCTGTGAATATATTAAACAGAATGATTATATTTGGTCATGTTCTAACTGCTACCATGTTTTACacttaaaatgtattaaaaagtgGGCAAAATCGTCACAAGCAGAAAATGGTTGGAGATGTCCAGCATGTCAAAATGTAAGCTTGGTAATACCTgaggattatttttgtttttgcggCAAGACAAGAACACCCGAATGGAATCGTAGAGATGTCGCGCATTCGTGCGGTGAAATTTGTAGTAGGACATTGTCGAAAAATAGTTGTCCTCATAAGTGCACTCTTTTGTGTCATCCAGGATCTTGTCCACAATGTACAGCAATGGTAACAAAATATTGCGGATGCGGTAAAACTTCGCAAACGGTACAATGCAGCGCTCATAAATTATTACTGTGCGATTCTATATGTGGAAAGGATTTAAATTGTGGCAAACATAAATGTGAACAAAAGTGCCATCATGGAGAATGTGCAAATTGTGAAAAAACAATAACACAAGaatGTTACTGCGGTAAGAATACAAGAGAAGTAACATGCCAGAGTAATGTTTCATTGATCTATTCCTGTGAAAATATCTGTGGCAAGTTATTAGAATGTGGAAATCATACTTGTACAAAGTTGTGTCATGCAGATGCTTGTGAACCCTGTTCTTTAACTCCTGAGAAAATTACAACTTGCTACTGTGGGCAAACACCATtaacagaagaaagaaaaacttgCTTAGATCCAATTCCTACTTGTGACAAAATATGTTCGAAACGTTTAAAGTGTGGACAACCTAATAATCCTCACAAGTGTACAGCTACATGTCACCAAGGGGATTGTCCCGTTTGCGATCTAACTACCGATGTTAAATGTCGTTGCGGAAACATGGATAGAGAGATACCTTGTAAAGATTTGACGTCGAAAGCTGACGATGCACGATGTGAAAAAAGATGTACGAAGAAAAGATCTTGTGGCAAACACAAATGTAACCAACTTTGTTGCATAGAGATAGAGCATATTTGTCCATTGATTTGTTCGAAAACTTTAAGCTGTGGTAGACATAAATGCGAGCAAAGTTGCCATAAAGGAAGATGTCAACCTTGTTGGCGTAGTAGCTTCGATGAACTATACTGCGAATGCGGCGCTTCCGTAATATTTCCTCCTGTTCCCTGTGGTACTAGAAGACCTATTTGCGAGAGGCCTTGCTCTCGTCAGCATTCTTGCGGACATGTACTGCATAATTGTCATAGCGAACCAACGTGTCCTCCTTGTACCGTTCTTACTCAGAGGTGGTGCCATGGCAAGCACGAGTTACGAAAAGCTGTGCCATGTCATGTCGATGGAATTTCATGTGGTATGCCATGTAATAAGCCCATATCTTGTGGGCGACATAAGTGTATTACTATTTGTCATCCTGGACCATGTGAAAAGCCAGGACAGCAATGCACTCAGCCTTGTACTATTCCAAGAGAAATGTGTGGACATGTTTGTGGTGCCCCATGCCACGAGGGTAAATGCCCAGATACATCGTGCAAGGAAATGGTTAAGGTAACATGTCAATGTGGACATAGAACCATGTCCCGCGTTTGTGCCGAAAATGCTAAGGAATACCAGAGAATAGCAAGTAGTATACTAGCTAGCAAGATGGCTGATATGCAGTTAGGTCATTCTATTAATTTGGAGGAAGTGTTTGGTCAAGGAGCGAAAAAGCAAAATCAGTTGAAAACTTTAGAATGCAACGATGAATGCAAGCTAATAGAACGAAATAGAAGATTGGCATTAGGTTTACAAATTGTAAATCCAGATTTAAGTGGAAAATTAATGCCTAGATATAGCGATTTTATGAAACAGTGGGCTAAGAAGGATCCACATTTTTGTCAGATGGTTCATGACAAACTAACAGAGTTAGTTCAATTAGCGAAGACTTCTAAGCAGAAATCACGCAGCTACTCTTTCGACAGTATGAACAAGGATAAACGTCATTTCGTTCATGAATCTTGCGAACATTTTGGTTGCGAAAGTCAGGCATACGATCAGGAACCAAAAAGAAACGTAGTTGCAACTGCTGTGAAAGATAAGTGTTGGTTACCTAGCTATAGTTTATTAGAGATTGTACAACGAGAAAATGGTCAGAGAAAGGTTCCCGGTCCAATGCTGAACACTTCAAAAACTGATGGTTCTATAAAGACAATATTATCACTGCCTGCAAAAAGAACTCAAAAATCGGAAACACCGTTGAATATAAAGACATCTGAACCAGAAATAGATTACTTTGATTATCAAGGTTAA
Protein Sequence
MATWDGSYSGPDDQNYYVYSDQNVPEPATENWAYFPNNISNNYLQSNREFYVQNEPIFEQNCPSTFYHSNANVMPSLLSTANNYHDHLTNPIDNTQILNNQEYFPNVVKSQPCYVPDVCWKHDYNFKKNKTKYNSARGVKEATSTKLHAMAEEFVPNNTESVSKTHGSENTKSANIADSCIKDNDRSDKYFFCNTSRPERKYNNKKNFNHKSKEGQQDQFYKRNAYANSYQQPSKPNKFQGNKYYINKYYSSKPQVDADMANESALNNATNDSTVCNNKKVSMPNFYKGESSSNMDVNLNKNKDFSNECNVQRTITANDGNTQDAGMQQSNDQIKEFTYYNSGLKPSSSNHRNIKKYQYNTRYNKEESFYKEKRRNYQGYNRENYSRENKSKVKGQMYSNGERNEFKEYSNGDTGLEVKDMKEKKHNYQGYNGFKEHNKESKAEVFEEKDKGKNYMFESKEKGYEHWRNRKEINEKNSIQKRRQSKKSLVDDDASQRERLTDQLNRGQLECLVCCEYIKQNDYIWSCSNCYHVLHLKCIKKWAKSSQAENGWRCPACQNVSLVIPEDYFCFCGKTRTPEWNRRDVAHSCGEICSRTLSKNSCPHKCTLLCHPGSCPQCTAMVTKYCGCGKTSQTVQCSAHKLLLCDSICGKDLNCGKHKCEQKCHHGECANCEKTITQECYCGKNTREVTCQSNVSLIYSCENICGKLLECGNHTCTKLCHADACEPCSLTPEKITTCYCGQTPLTEERKTCLDPIPTCDKICSKRLKCGQPNNPHKCTATCHQGDCPVCDLTTDVKCRCGNMDREIPCKDLTSKADDARCEKRCTKKRSCGKHKCNQLCCIEIEHICPLICSKTLSCGRHKCEQSCHKGRCQPCWRSSFDELYCECGASVIFPPVPCGTRRPICERPCSRQHSCGHVLHNCHSEPTCPPCTVLTQRWCHGKHELRKAVPCHVDGISCGMPCNKPISCGRHKCITICHPGPCEKPGQQCTQPCTIPREMCGHVCGAPCHEGKCPDTSCKEMVKVTCQCGHRTMSRVCAENAKEYQRIASSILASKMADMQLGHSINLEEVFGQGAKKQNQLKTLECNDECKLIERNRRLALGLQIVNPDLSGKLMPRYSDFMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNKDKRHFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTSKTDGSIKTILSLPAKRTQKSETPLNIKTSEPEIDYFDYQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00761311;
90% Identity
-
80% Identity
-