Aplu098322.1
Basic Information
- Insect
- Anthophora plumipes
- Gene Symbol
- -
- Assembly
- GCA_951804975.1
- Location
- OX638117.1:15191382-15195179[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.3e-05 0.032 17.3 4.2 1 23 90 113 90 113 0.97 2 13 1 5.2e+02 4.1 2.8 1 17 118 134 118 135 0.93 3 13 4 2e+03 2.2 1.1 2 23 150 172 149 172 0.91 4 13 0.00094 0.47 13.6 0.9 2 23 180 201 179 201 0.96 5 13 9.2e-05 0.046 16.8 1.4 1 23 387 410 387 410 0.97 6 13 1.1e-05 0.0055 19.7 5.0 1 23 416 438 416 438 0.98 7 13 0.01 5.2 10.3 7.6 1 23 447 470 447 470 0.94 8 13 0.0008 0.4 13.9 1.2 1 23 476 498 476 498 0.95 9 13 1.1e-05 0.0053 19.8 2.4 1 23 503 526 503 526 0.96 10 13 0.00068 0.34 14.1 0.9 1 23 532 554 532 554 0.98 11 13 6.1e-07 0.00031 23.7 0.8 1 23 558 580 558 580 0.98 12 13 0.00062 0.31 14.2 7.4 1 23 586 608 586 608 0.99 13 13 4.5e-05 0.022 17.8 3.2 1 23 614 636 614 636 0.97
Sequence Information
- Coding Sequence
- ATGAAAAGTGACCGTATCCGATGTAAAATGTCCGgaacagaaaagaagaagaagaggaagaagaggaagatacTGAAGAGGAAATCTCTGGAAGTATCGTCGAAGGATTTCGCTTCGAAGTTGCAGGAAAGATCATTGAATGGTTTGAATTCGAAGAAAGAAAGTGATAATAAGTGTGACGAAAAGATACTTTGTTATTTCTGTCAACTAAGTATCTAcgcaaaaaataagaaaaggcaTATATTTGCACATAATGCTCCCTCCTCTTTCCAGTGCAATATATGCACGAGAAAGTACAAGCATAAAAGAACACTGAGTAAGCATATATTGAGTGTACACGGAAATGCTATGTACAATTGTCAATATTGTGATTTTACAACAGTTCATTGCTCTTACTTGCAGGAGGATTACAACAAACACATAGTCATCTACGGCAAAGAGCCGTGTATTTGTGACGTTTGCGACGTGAAAATGGCGAACAAGATCTCTCTTTACTATCACAAGAATTACAGTCACACGGTGAAGGATGCAAGATCTTCATGTCCAATATGCAAGAAGAAATTGCAAACGCAGAAGAGTCTGATCAACCATGTGCAACAACACAAGCGGAAGTGCATATGCGAGGTATCAGACTGTATATATGCACCACATGCGGTTAGAATTTCGCCCAACAGCCAGCGCTTTGCATTCACTGGAAGAAAAAAACATCTGGATTCCACAGATCCTCCGCCTTCTGTGTCGATAACGAACCTCGTTAACGCTGTAACGCGAAGTAGCAAGAAATACATGAAATCAACGCAGCGTTTAATCCCGAAGAACAAAGTGGCCGCCATTAACGAAGCGAAAAGCGAATTAAGAGCCTCGCACAAATCCTCAAATGTTCTCCAACGAAGAATCGCGTTTCTTGCCTCAAGAAATCGCAAACGCAGAAGCAACAGGCGTTTGAACAACTCTTGCCGCgttcaaagaagaaatattcCCTCGAACTCTCGTAATTTCGAACCGGAAGAAATAAACGATGATAAAAGAATTTCCTCGAAGAACTCGgcgaataaaaaattatcgtcTTTCAACAGTTGTTCAACAGACAAATTAGCtaacgaaaagaagaattttacgCAGCAAGAAGATCTGTATAAAAAGCTTCACGACGGTACGTACACTTGCGACATTTGTCAAACGACGTTCGAACAGAAGAGCAAGATCCTCCGTCATATCACCAGTAAGCACAGCTTCCATCGACCGTTCAAGTGTTCAACCTGCGACAAAACGTTCAAATACAAATGCGACTTGAAGGCTCACCGATTGGTTCATCAAGACGTCGACTCGAGTTTATTGCATTGTTGCGACAAGTGTGATTATCGAACGAAGACGAAAAACAACCTGAAGTCTCATTATATCCGACGACACACGGATGATTACAAATTCGCGTGCGAGCATTGCGGGAAACGTTTCAAAATGGAGTGGGACCTGAAGTTTCACATCGGAACGCACAGCAGTTCGCAGCATATGTGCGACATCTGCGGGAAATTCTACACGAGCAATTATTCGTTGTACAAGCATAGAAAAGTGGCACATTTGAACGAGTACAAGTTTCAGTGCAACGTTTGTAACAAGAGACTATTGACGCAGGAGAATCTGGATAATCACATGCAACAACATAGTAGAACGTATGAGTGTAAAGAATGTGGAAAGGTGTTCGcctcgaagagatatttagcaACTCACACGACAACTCACACAGGTGTTAAACCGTATACGTGTCACATTTGCAAGAAGAATTTTCGAACGTCTCACATGAGGAATACACATTTATTGACGCATTCCGCTGAAAGACCACATATTTGTGATCTCTGTGGACAATCGTTTAAGAGAAGATACTACATGATAGAGCATCGAAGGAAACATCCGGATGCTCATTTGTCCTCGCCTCCTGTACCACTTGGAAGAAAGAAAACTACAGTTGAATCGGGAACCGACGCTACGAACgaatttcaaacagaaatttctTTGTAA
- Protein Sequence
- MKSDRIRCKMSGTEKKKKRKKRKILKRKSLEVSSKDFASKLQERSLNGLNSKKESDNKCDEKILCYFCQLSIYAKNKKRHIFAHNAPSSFQCNICTRKYKHKRTLSKHILSVHGNAMYNCQYCDFTTVHCSYLQEDYNKHIVIYGKEPCICDVCDVKMANKISLYYHKNYSHTVKDARSSCPICKKKLQTQKSLINHVQQHKRKCICEVSDCIYAPHAVRISPNSQRFAFTGRKKHLDSTDPPPSVSITNLVNAVTRSSKKYMKSTQRLIPKNKVAAINEAKSELRASHKSSNVLQRRIAFLASRNRKRRSNRRLNNSCRVQRRNIPSNSRNFEPEEINDDKRISSKNSANKKLSSFNSCSTDKLANEKKNFTQQEDLYKKLHDGTYTCDICQTTFEQKSKILRHITSKHSFHRPFKCSTCDKTFKYKCDLKAHRLVHQDVDSSLLHCCDKCDYRTKTKNNLKSHYIRRHTDDYKFACEHCGKRFKMEWDLKFHIGTHSSSQHMCDICGKFYTSNYSLYKHRKVAHLNEYKFQCNVCNKRLLTQENLDNHMQQHSRTYECKECGKVFASKRYLATHTTTHTGVKPYTCHICKKNFRTSHMRNTHLLTHSAERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPVPLGRKKTTVESGTDATNEFQTEISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -