Aplu103306.1
Basic Information
- Insect
- Anthophora plumipes
- Gene Symbol
- -
- Assembly
- GCA_951804975.1
- Location
- OX638119.1:11223858-11226878[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.1 4.1e+03 1.2 1.2 3 20 325 342 323 344 0.87 2 16 0.019 9.8 9.5 1.0 2 20 381 399 380 401 0.92 3 16 0.00021 0.1 15.7 0.9 2 23 443 465 442 465 0.94 4 16 0.00049 0.25 14.5 0.1 2 23 472 493 471 493 0.96 5 16 3.6e-06 0.0018 21.2 3.4 1 23 499 521 499 521 0.96 6 16 3.1e-05 0.016 18.3 1.8 1 23 530 552 530 552 0.97 7 16 2e-05 0.01 18.9 2.7 1 23 558 580 558 580 0.98 8 16 2e-06 0.001 22.0 1.8 1 23 585 607 585 607 0.97 9 16 0.096 48 7.3 4.3 1 23 614 636 614 636 0.99 10 16 0.00017 0.085 16.0 0.3 2 23 656 677 655 677 0.97 11 16 0.00029 0.15 15.2 0.2 2 23 685 707 684 707 0.96 12 16 0.00046 0.23 14.6 0.6 1 23 713 735 713 735 0.96 13 16 0.00033 0.17 15.0 3.2 1 23 741 763 741 763 0.98 14 16 3.9e-08 2e-05 27.4 1.0 1 23 769 791 769 791 0.99 15 16 2.2e-06 0.0011 21.9 1.6 1 23 797 819 797 819 0.97 16 16 0.0054 2.7 11.2 0.2 2 23 825 846 824 846 0.94
Sequence Information
- Coding Sequence
- ATGAAGATAGTTTGCGCCGCaaaaaattgtaaacactcTTCGGATAACGAAGACTCAGCGCATGTcatgtttattaattttccaaatgATGACACCTCCAAAATATGGGCCCATCATTGTGGCAGAACAGACCTTTTGATGAAATCCAACGAAGAATTGCATTTAAATTACTATATATGTTCTCATCATATAGAGGATCATTACTATATCAGTAAAACAGATCCTGTCATAATAGAGCAACATGCTGTTCCTACATTGTTTGAGTCACAAATTATTGAAGAAAAGACTTCAAAGAACATCTTTGATCGAAATGAACCAACAGAAATAACTGATAATGTTCTAACATACTGTGATATGGATGTTGAAATAGATCAATATCGTGATATtagtattaaattttcaaatttatgtaGAATATGTGGAGAATCATCTTTGAATGGTATAGAGATATTTGCAGCAAAAGggatagaattgaaattaaaagaaaaaataaatttacaccTACCAATCACTGTTGATATGGAAGATTTAATGCCACAAAAGTTATGTATGAATTGTTATGACAAATTGGAAGCTACACATTTATTAGTTATAAATTCTTTAAGAACAGACATGCGATTGAAgagatttttaaatatcaatgaaGAACTAAACTATGATAATAAATACAATTCAATAGCAAAAAAATGTTTCCTAGAAATAGCTGAAGAAATGTGTCCCAGTGAAACAACTGAAGTTACATCTATAGAACTATCTTCAGATAAAGTTGAAGAAATTTCTATGAATCAAGAAATCACCAAAAAATTTAGTCATTTGGAAAATATTAACACACAGAAAGACAGCTTTGGAAACAGTATAAGAAAGGAAATACAATCTGAATTAAGTAGCTTTATTGAATCATATACTGAAAAAGATAAAGGACAAAAATCTACAAATATAACTACAAAAAATCGCCCAAATAATGAAATTCATTGTATTCATTGCAAGGAtacatttaaaacagaagaaatgtttgaaaaccACAAAATGTTGTGTGATGAAGAAGAAACAATAACACAAAAgcagaaagaaaataatagtaatgtaAATGATAGAGAGTCTAGCAATGTAAAAATAACGAACTTCCAATATGTTATGAAAACTTGTAACATCTGTCATGaacattttgaaaatgaaaaactcCTTGCTGAACACAAGCTTTCATACTGCAAACTCCTCCAAGAAGAACATTATGAAGTCTCTAACAAATCAAATATGAATCAAAAGCAAAGTGATATCTATAATGATTCTCAGATCAGTAATATTCCACCAATGGAAACCAATAAAAAATGTGGTCATTGCGATTTGGTTTATAGTACTAAGAAAGAACTATTAAATCATATTATAGAGTATCATGAAGGACAACTTTCACTTAAATGTAGCATATGTAACAGAAGTTATGACAAATGGTCTGGTTTAGATGTGCACGAAGCTACTCACAGACTAGATAAACCGTATCTGTGCGATTTGTGTGGAAaaagttttaaacattctaaCAATTTAAGAGGGCACAAAAGAACTCATTTGGATGATTCAAAAAAAAAGCGGCATGTCTgtgaaatttgtggaaatgcCTTTAGATCTAGATTTCATTTGGCTGAACATATGAACCAACATAATGGAAATAAACCTTATTCTTGTGAAAAATGCGgaaaaacattttataaaagaatACAACTAAGACAACATAAACTGTCTCATGGTTTGAATAAACACATCTGTCCAGTATGTGGTACAACCTTCAATCGTAAAGGAAATATGAATACACATCTTAAACGGCATAACAATGGAGATGGTACATACACGTGTAGCgtATGTATGCTAAGATGTAAATCGATGAGCGAGTTGAAGTTACACAGGAAAAAGCATACAGACCAAGATATCATAGAAAGTATAAAGAGAAAGTGCAATGATAAAACTATATGGCAATGTAACAACTGCAATAGAATATTTTCAACACGAGCTGTGTTACTCAATCATGAACGCATACATAAAGGAGAAAGAATAAGCGTTGAGTGCAATATTTGTGGGAAAAAATTAGCGAGtaaaaattctttaatataTCATACAAAATCCATCCATTCTTCCGAAAGGCCACATATGTGTCAGTATTGTGGAGAATCTTTTGTGTCCAAAGAAGCACGTCTCATACACGAAAGAATACATACCGGAGAACGTCCTTATGTttgtaaaatatgcaaaatggaGTACAAGTGTTCCAGCAATCTTAATCAACACATGAAAATTCATTCCGGTGTTAAGCCCTATAAATGTACATATTGCGATAAAAGTTTCACGCGTAAGGGTGCTCTAAACGTACACGAAAGAATTCACACCGGGGAGAAACCATTTGCTTGTGAAACGTGTGGCAGAACTTTTTCGCAAAAAAATGATATGTTAAAACATACTAGAACGCACGATGCAAAATCGTTACGTTGCGAACAGTGCGACGAAATTTTCGCAAAGAAGAAAGATATCCTTAAGCATATCGTTTTACACGAACAGAACAATTCTACGATTCAGGAGTACATAGAAGAACAACAACAAATAGAATCTTATACCGTAGATATACCATGTTCTGAATTGGAATAA
- Protein Sequence
- MKIVCAAKNCKHSSDNEDSAHVMFINFPNDDTSKIWAHHCGRTDLLMKSNEELHLNYYICSHHIEDHYYISKTDPVIIEQHAVPTLFESQIIEEKTSKNIFDRNEPTEITDNVLTYCDMDVEIDQYRDISIKFSNLCRICGESSLNGIEIFAAKGIELKLKEKINLHLPITVDMEDLMPQKLCMNCYDKLEATHLLVINSLRTDMRLKRFLNINEELNYDNKYNSIAKKCFLEIAEEMCPSETTEVTSIELSSDKVEEISMNQEITKKFSHLENINTQKDSFGNSIRKEIQSELSSFIESYTEKDKGQKSTNITTKNRPNNEIHCIHCKDTFKTEEMFENHKMLCDEEETITQKQKENNSNVNDRESSNVKITNFQYVMKTCNICHEHFENEKLLAEHKLSYCKLLQEEHYEVSNKSNMNQKQSDIYNDSQISNIPPMETNKKCGHCDLVYSTKKELLNHIIEYHEGQLSLKCSICNRSYDKWSGLDVHEATHRLDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHVCEICGNAFRSRFHLAEHMNQHNGNKPYSCEKCGKTFYKRIQLRQHKLSHGLNKHICPVCGTTFNRKGNMNTHLKRHNNGDGTYTCSVCMLRCKSMSELKLHRKKHTDQDIIESIKRKCNDKTIWQCNNCNRIFSTRAVLLNHERIHKGERISVECNICGKKLASKNSLIYHTKSIHSSERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSGVKPYKCTYCDKSFTRKGALNVHERIHTGEKPFACETCGRTFSQKNDMLKHTRTHDAKSLRCEQCDEIFAKKKDILKHIVLHEQNNSTIQEYIEEQQQIESYTVDIPCSELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118059;
- 90% Identity
- iTF_00118059;
- 80% Identity
- iTF_00118059;