Agra058398.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- stc
- Assembly
- GCA_030068095.1
- Location
- CM057950.1:6548762-6551761[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9 8.2e+04 -4.0 1.6 15 19 310 314 309 314 0.81 2 12 3.7e-06 0.17 14.2 14.3 3 19 357 373 356 373 0.93 3 12 0.52 2.3e+04 -2.2 0.6 5 10 398 403 398 403 0.95 4 12 1.6e-07 0.007 18.6 10.3 1 18 409 426 409 427 0.97 5 12 3.9e-06 0.17 14.1 13.5 1 18 467 484 467 485 0.97 6 12 0.0001 4.5 9.6 14.4 4 19 532 547 525 547 0.89 7 12 0.0096 4.2e+02 3.3 12.9 1 11 587 597 587 609 0.90 8 12 1.7e-09 7.5e-05 24.9 11.2 1 18 614 631 614 632 0.98 9 12 0.96 4.2e+04 -3.1 1.5 6 10 661 665 661 666 0.82 10 12 0.032 1.4e+03 1.6 16.0 1 18 671 687 671 688 0.85 11 12 2.5e-06 0.11 14.8 16.0 1 19 724 743 724 746 0.96 12 12 0.0038 1.7e+02 4.6 15.1 1 18 753 771 753 772 0.89
Sequence Information
- Coding Sequence
- ATGTCTAGCTATCGAAATAATCGAGGTGGTTATTATTATTCTGCAGATAATCGTAGCGCCAACTGGAGCAGTAATTCTGCTCAAGACATCCATGTCCATTCTAGCCGAGGAAATTCATCTGAAAATTATCCATCTCAGGGAACCTCACAAGGAGCAGTAAGAAGACAGCCATACAACAGGCCAGAATATGATTACCACCAGCCAGATAGACCCGAAAATTGCTCTGATTTACAGCCAGATGCTCCAGAATTCTATCCATCTGGAGGATCAGAGAATACAGGAGCTGTAAGAAAGAGGTATAGAGATAAAAATACATATGACAATAATTGGCGCtcttcaaaatcaaattttaagtCACAAAGTTACAATAGTAAACCATCCTACAAAAGAAATAACTTTCAAAATGCATCTTctagcaaaaaccaaaatttcaaCTATCAGGAGACTTTAGATGAAAGTTGTAGAGACTCAAACAGTATGGGGGATGTACATTGTGAAAGAAGGTATGAGAACACTCATCATAATAATGGATATAGAAGCAAATATGGTAACTATCAACAAAACTATGAATATAGCAACAACTATGGCAGGTCTTACTCTAATGGgtataaaaaacatcaaaagaaaacctttcCAGTAAGTACCAAAACTAATAGAGGTTATAATGCATCTAACCCTAACTCTTCAGAGAGAAAAGCCAATAATTCTGTTGGCAAAGagaatcttttaaaaagaaatctctCCACTGCAGATCAGAGAGAAAGGTTAACAGAAATGATTGATGGAAATCTCTTAGAGTGCATGGTATGCtgtgaaaaaatcaaaagagcTGATAAGGTGTGGGCTTGCACCCAATGTTATCATATTATTCACATGAAATGCACTGTGGCATGGGCAGAGTCGTCAAAAGTAGAAGACAATTGGCGCTGTCCTGCATGCCAAAATATTTATGCGGAAGTTCCAAGTCAGTATTTGTGTTTTTGTGGAAAAGTCACAGATCCAAAACAGGACCCTAATATTATACCTCACGGGTGTGACAATATGTGCttaagaaaaggaaaaaattgtGAACATAAATGCAGCATTTTGTGTCACCCAGGGCCTTGCCCTGAATGCACCATTATGGTTTCAAAGCCTTGCGGATGTGGAGCCACCAGCCAGATGGTTAAATGCTGTACAGATCTTAATTTAACTTGTGATTCAGTGTGTAACAAACTTTTAAACTGTGGTTTACACAGGTGTGTTGCCTCCTGCCATATTGGACCTTGTTTACCATGTGAAGAGATGATTATTCAGGAATGTTTCTGTGGCAAAACTAGCAGAAAAATTCAATGTAATGAGGAAAATGTTGGAAAAACTCATTTCATATGTGataatatatgtaataaattGCTGCTCTGTGGTAATCACAAATGTCAAAAACAGTGCCATCCAGAAGAATGTGATATTTGTGAAACAGACATTGACATTATTAAATCCTGTTATTGTGGTaaaactgcattaaaaaatCCAAGAACTTCATGTCTCGATCCCATTCCTTGTTGTGATAACATATGTGGTAAGCAACTTATATGTGGACCCCCCAGCAATCCTCATCTGTGTAGGGTCAAATGCCATGCAGGCAAATGCCCTCCCTGTCCATCGACAACATTGATTCGATGCCGTTGCGGCCATATGGATAAAGAAATAGCATGTCTGAAGCTTACAAGCAAAGCAGATGATCAAAGATGTGacaaaaaatgcacaaaaaaacGTCTTTGTGGAAAGCACACCTGTAAGCAAAAATGCTGCATTGAAATTGAGCATATATGTCCACTGCCATGTAACAAACTACTCACTTGTGGCCTTCATAGATGTGATCTCACATGTCATTCGGGACGCTGCCCTCCTTGCATGGAAACCAGTTTTGAAGAAATGTTTTGTGAGTGTGGGGCCAGTGTTCTTTATCCACCCATTCCATGTGGAACAAAACCACCTCTTTGCCAGAAACCTTGTTCCAAGCCCCGCCCATGTGGACACCCACCGAATCATGAATGCCATCCTGGTACCTGTCCTCCATGCTATGTGCTAACTAAACAGTGGTGTTTTGGCAAACACGAACAAAGATCATGCATTCCCTGCAATCAACATAGCTTCAGTTGTGGCTTGCCTTGTGGAAAACCAATGCCATGTGGCAGACATAAATGCATCAAACCATGTCATGATGATGATTGTCCAGTGCCTTGTACCCAGCCATGTACCACTCCAAGGATGCTGTGTGGCCATCCTTGCAATAAACCTTGTCACAATCCCCCTTGCCCGGAAAGTAACTGCAGACAAATGGTTCCAGTAACTTGCTTGTGTGGTTTGCGGAAAAGCACCAAAGTATGTCTGGACTTAACCGATGAATTCAGGAATATTGAAATGTctcagttaaaagaaaaaatgactTATCTCTCATGCAATCAGAGCATAGATTTAACAGACACAACAGTAAAAAAACCATCAGTTCTAAAAATCCTCGATTGCAATGATGAATGTAAAGTGGTTGAAAGAAACAGAAGGTTGGCCATTGGGCTGCAGATTCAGAACCCTGACTTAAGCCAAAAACTTACACCGAGGTATTCAGAGTTACTGAAACAATGGGCCAAAAAGGACCCAAAGTTTTGCCAAAGGGTCCACGATAAACTCACAGAACTAGTACAGCTTTCTAAACAGAGCAAACAGAAGAGTCGTGCCTTTTCGTTTGAGTCTATGAACCGCGATAAGCGCCAGTTTATCCATGAATACTGCGAATATTTTGGGGTGGAAAGTGCCGCTTATGATGCAGAACCAAATAGAAATGTTGTTGCAACAGCAATTAAGGACAAGTCCTGGTTACCTAGCATGAGTCTTTTAGAGGTGCTTCAAAGGGAAAACGGACAAAGGAAAGTGCCAGGTCCCATTTTATGTAATAGTTCCTCCCACCATTCTGAGACTGTGTCCTTAAGGCTGCCTTCAAGTTCAAAAAGAATTGAGTAA
- Protein Sequence
- MSSYRNNRGGYYYSADNRSANWSSNSAQDIHVHSSRGNSSENYPSQGTSQGAVRRQPYNRPEYDYHQPDRPENCSDLQPDAPEFYPSGGSENTGAVRKRYRDKNTYDNNWRSSKSNFKSQSYNSKPSYKRNNFQNASSSKNQNFNYQETLDESCRDSNSMGDVHCERRYENTHHNNGYRSKYGNYQQNYEYSNNYGRSYSNGYKKHQKKTFPVSTKTNRGYNASNPNSSERKANNSVGKENLLKRNLSTADQRERLTEMIDGNLLECMVCCEKIKRADKVWACTQCYHIIHMKCTVAWAESSKVEDNWRCPACQNIYAEVPSQYLCFCGKVTDPKQDPNIIPHGCDNMCLRKGKNCEHKCSILCHPGPCPECTIMVSKPCGCGATSQMVKCCTDLNLTCDSVCNKLLNCGLHRCVASCHIGPCLPCEEMIIQECFCGKTSRKIQCNEENVGKTHFICDNICNKLLLCGNHKCQKQCHPEECDICETDIDIIKSCYCGKTALKNPRTSCLDPIPCCDNICGKQLICGPPSNPHLCRVKCHAGKCPPCPSTTLIRCRCGHMDKEIACLKLTSKADDQRCDKKCTKKRLCGKHTCKQKCCIEIEHICPLPCNKLLTCGLHRCDLTCHSGRCPPCMETSFEEMFCECGASVLYPPIPCGTKPPLCQKPCSKPRPCGHPPNHECHPGTCPPCYVLTKQWCFGKHEQRSCIPCNQHSFSCGLPCGKPMPCGRHKCIKPCHDDDCPVPCTQPCTTPRMLCGHPCNKPCHNPPCPESNCRQMVPVTCLCGLRKSTKVCLDLTDEFRNIEMSQLKEKMTYLSCNQSIDLTDTTVKKPSVLKILDCNDECKVVERNRRLAIGLQIQNPDLSQKLTPRYSELLKQWAKKDPKFCQRVHDKLTELVQLSKQSKQKSRAFSFESMNRDKRQFIHEYCEYFGVESAAYDAEPNRNVVATAIKDKSWLPSMSLLEVLQRENGQRKVPGPILCNSSSHHSETVSLRLPSSSKRIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -