Basic Information

Insect: Anthonomus grandis
Gene Symbol: -
Assembly: GCA_030068095.1
Location: CM057949.1:3487915-3490173[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0091 2.4 11.0 0.3 1 23 91 113 91 113 0.93

2 12 0.33 87 6.1 0.4 2 23 122 143 121 143 0.96

3 12 0.0097 2.5 10.9 3.2 1 23 155 177 155 177 0.96

4 12 0.0039 1 12.1 6.4 1 23 184 206 184 206 0.98

5 12 0.78 2.1e+02 4.9 2.4 1 23 246 268 246 268 0.98

6 12 0.0014 0.36 13.6 2.0 1 23 282 304 282 304 0.98

7 12 7.2 1.9e+03 1.9 0.8 1 23 354 376 354 376 0.84

8 12 0.055 14 8.5 2.2 1 23 383 405 383 405 0.98

9 12 0.0043 1.1 12.0 1.9 1 23 535 557 535 557 0.95

10 12 0.021 5.4 9.9 0.6 1 23 563 585 563 585 0.97

11 12 0.007 1.8 11.3 0.6 3 23 652 672 652 672 0.99

12 12 0.061 16 8.4 2.4 1 23 682 704 682 704 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0091	2.4	11.0	0.3	1	23	91	113	91	113	0.93
2	12	0.33	87	6.1	0.4	2	23	122	143	121	143	0.96
3	12	0.0097	2.5	10.9	3.2	1	23	155	177	155	177	0.96
4	12	0.0039	1	12.1	6.4	1	23	184	206	184	206	0.98
5	12	0.78	2.1e+02	4.9	2.4	1	23	246	268	246	268	0.98
6	12	0.0014	0.36	13.6	2.0	1	23	282	304	282	304	0.98
7	12	7.2	1.9e+03	1.9	0.8	1	23	354	376	354	376	0.84
8	12	0.055	14	8.5	2.2	1	23	383	405	383	405	0.98
9	12	0.0043	1.1	12.0	1.9	1	23	535	557	535	557	0.95
10	12	0.021	5.4	9.9	0.6	1	23	563	585	563	585	0.97
11	12	0.007	1.8	11.3	0.6	3	23	652	672	652	672	0.99
12	12	0.061	16	8.4	2.4	1	23	682	704	682	704	0.97

Sequence Information

Coding Sequence: atgcttgaaataaataTCCAGATTAAATTTCGTAAAAAACCCAACCCATGTTCAACTGGAGCAAACATTTGCtccaaaaaattcattaataatcTTAAAACACAAATTGAATTAAATACTGACAATCTAATTTCTTTTCAGCGTCACTGCAGATTGAAACACAGCGGCGATATAAGAGTAGTCAGCACTAAGAACGGCcaagaaaaaatcgaaatcGAGGAGCTGTTGGACGACCTGGACGACTTGGACCCCTCCTCACAATCTGGAGTGTACAAATGCAGCATTTGTCCCTACACCACCGACACGAACGCGGACTTCCAAGGACACTTCGAGGGACATTTGCCCCAAAACACTACCGCGCTCAAGTGTATGTATTGCAACTATCGCGTGAACGCCGAGAAGGACTTTATCGAACATTTAAAGTTGCACGAGACGACCTCTAGTGATCCGGAAGGGAAAAAGTTCAAATGCTCCCTCTGTCCTTACGTGACCAATTCGAAATCCCAGTACACTTATCACAAACAGTTTCATAAATATCGGGGCGGTCAGTACGTTTGCGATCATTGCAATTATAACGTTAGCAAGCGACATTTGTTGCATCAACATATGAAGGTGCACGGAATCAATATGAAGAATAATAGTCAAGCGGCTAGTGGTGATTCTGGGGAGGAAGTTTCTGATTCTACTGATATTCCTTTGGTATGGGTGTCGAAGAATAATCAGTTTTCGAAAATGTTCAAGTGCCGGTTCTGTCCTCACGTGAACTCTCGTAAGGTCAACATTCAGGAGCACGAAAAAATGCATGGCGCTCGCGAAAAGTCTCCTAAAGTAAATGAGCAGGAGCACAAGTGCACCGAGTGCAATTACGTGTGTAATAATGCGGGGGTGCTCTCTTCGCATATAAAAGTTCACCAGGGGGTGTACGGAGTGGTGCATTGCCCCGTGGACACCACCAAACCTGATGAAGAGCAACTGAAAGAACTTTTAGGTAACAACGAGTTTGATACCTCCGAGTTTTTAGAAGTTGAAATGGAAGAGGTGGACACTGAGAAGTTTTTGCACTTTTGCCAAGAATGCCCAGCAAGATTCCTAAAAGAAAACGAGCTCGCTATACACAAAGATTTCCATAATAACCTAGACAATCAGTTTAAATGCGAGCACTGCACTTACGCCACTAACGTGGACGACTACTTAAAATCCCACTCCAAGGTGCACACCACAGACTACCAAGAAAGGACCAATGTGCTTAAAAGCTTTCACACGGTAAACTCCGAACATGCTGAAGCTCCCTTAAAAGAAACCACCGGACCTGAAGGGGACGTAATATGGAAAACCGAACCAGTCAAGAGCAAACTGgaacaaaaaaacaacattttggCATCCTTCCTTAGTAAACCTTTGAAATCCGCCTTTACAGTCCCTCTGTCTGGAACCGACTTGTTTCAGCAACTTCATGAAGCCCAACAGAGGCAATCAGCAACCGAGGAAACCCAAACAAAAAGAAGTAAAGCTTCTGAAGAACATTTCGGCACCCAAATGCATGGCAATCCAGACTTCATCTATCAAACGTACATAAAAAACGGCAGAGCCAAAGAGAAACGTTACAAGTGCCATAAATGCCCCAGCGCATTCGAGAAACGTGAGCAGTACAAAATCCATTTGGGTCTCCACGGATCTAACCAGCGATACAACTGTGCTGCATGCGACTATTCGGTGAAGTACTATGCGAACTTCGTGCAACATTTGAAGAAACACAAGTTCAGTGATGACGCTCATGCGGCCAAAAAGGAAGAAGACTCTGAAGAGAACTTGGATGATGACGAAGACGAGGAAGAAGAAGCGGAAGAAGATTCTTGCATGGATTTAGTGAAAATTAGCGCAGAAGAGCAGCAAATGTCTGAGATTCTGCATCAGAAGACTCCGGTTCCCAGTGAGGAGAAAAAACTGCATTGGTGCCAATACTGCCCTTACGTAAACACACGTAGGGATGCCCTAGAAAATCACCAAAAGAAACACAAAAGTGTCTCCGGGGTTGTTCATACTTATGCGTGCGATCACTGTGATTTTTCAGTGCCACAGGTTCACTTTCTACGTGACCATACGAAACTTCATTTTATACCAAATAAGGTTAATCATGTGAACGGTTACATGTTATGTGATAATTTAAGGTTGGAGGCCAGTAACGGTGAACGGGATAATATGGTTTTATTGGATAACGATAATGAGGGggaaagtttaataataataagggtGAAGTAG
Protein Sequence: MLEINIQIKFRKKPNPCSTGANICSKKFINNLKTQIELNTDNLISFQRHCRLKHSGDIRVVSTKNGQEKIEIEELLDDLDDLDPSSQSGVYKCSICPYTTDTNADFQGHFEGHLPQNTTALKCMYCNYRVNAEKDFIEHLKLHETTSSDPEGKKFKCSLCPYVTNSKSQYTYHKQFHKYRGGQYVCDHCNYNVSKRHLLHQHMKVHGINMKNNSQAASGDSGEEVSDSTDIPLVWVSKNNQFSKMFKCRFCPHVNSRKVNIQEHEKMHGAREKSPKVNEQEHKCTECNYVCNNAGVLSSHIKVHQGVYGVVHCPVDTTKPDEEQLKELLGNNEFDTSEFLEVEMEEVDTEKFLHFCQECPARFLKENELAIHKDFHNNLDNQFKCEHCTYATNVDDYLKSHSKVHTTDYQERTNVLKSFHTVNSEHAEAPLKETTGPEGDVIWKTEPVKSKLEQKNNILASFLSKPLKSAFTVPLSGTDLFQQLHEAQQRQSATEETQTKRSKASEEHFGTQMHGNPDFIYQTYIKNGRAKEKRYKCHKCPSAFEKREQYKIHLGLHGSNQRYNCAACDYSVKYYANFVQHLKKHKFSDDAHAAKKEEDSEENLDDDEDEEEEAEEDSCMDLVKISAEEQQMSEILHQKTPVPSEEKKLHWCQYCPYVNTRRDALENHQKKHKSVSGVVHTYACDHCDFSVPQVHFLRDHTKLHFIPNKVNHVNGYMLCDNLRLEASNGERDNMVLLDNDNEGESLIIIRVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -