Agra055987.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057949.1:13365403-13371977[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3 6.1e+02 3.4 0.1 8 23 271 286 266 286 0.91 2 13 2.9 7.6e+02 3.1 0.1 6 21 296 311 296 312 0.88 3 13 9 2.3e+03 1.6 0.1 3 14 385 396 383 400 0.78 4 13 1e-05 0.0027 20.2 3.2 2 23 438 459 437 459 0.97 5 13 2e-06 0.00052 22.5 3.7 1 23 465 487 465 487 0.98 6 13 0.00016 0.043 16.5 0.7 1 23 492 515 492 515 0.94 7 13 2.1e-05 0.0056 19.2 0.5 2 23 536 557 535 557 0.97 8 13 0.0054 1.4 11.7 2.1 1 23 563 586 563 586 0.95 9 13 1.9e-05 0.0049 19.4 4.6 1 23 589 611 589 611 0.98 10 13 2.7e-06 0.00071 22.1 0.8 1 23 619 641 619 641 0.98 11 13 8.4e-07 0.00022 23.7 2.4 1 23 647 669 647 669 0.96 12 13 0.00014 0.036 16.7 1.8 1 23 675 697 675 697 0.99 13 13 0.0095 2.5 10.9 2.5 1 23 703 726 703 726 0.94
Sequence Information
- Coding Sequence
- atgcaaaaaaatcagTTCCAGTTAGCATTAAgtgactttaataaaatatgccgAGTATGCTTAACAAAATCCGAGGGTTTACAGTCGGTTTATGAGGTAAATTTCCCTAGTGAGGGGCACTGTGATCCCTTAGATGtgaggaaattatttaaaaaatattgtgattTAGAGGTTTGTCCAACTGATGAAAAACCTCAACAAATTTGTTTAGTTTGTATAAAACTACTGTATGATTCttgcaattttttcaaaaaatgtaccgAATCCAATGACGTTTTGGAAGATATAATACGCCAGGAAACAGTTAAAATCGAAATTGAGAGTGCAAAACTTGAGCCAGCCCTATTGAAAAGGAAAAGGACTAAAAGCCATGATGCAAAATATCACAGTGAATCGGAAGATGATGTATTTGTTGAAGACAACGACTCAGATTGGGATCCCTCAAATGATCAAGAAAATGTTGACTTAAAAGAGGATGTTTTTAATGCAGAAAAGACTAAAATTGATGATGATTTTAATACCTCTGATGAAGAATCTTTGGCATTAAAAGGAAAGAAAATTACTaggAAGAGGAAACTAGAAGAAAAGACTAGATCCAAAAAACTGTTAACAAGGAGAGGCAGGAGAAAAAAAACTGATCAAAATGAAATCAAACCTGATCCAGATGAATGTGACATCGAAAATACGTCAGAACTTGTGTGTAGACTATGTGGTCTAACTTTAAGTGACATAAATGCATCTATTGAGCATTATGATGAAAGTCATGCACCTGAGCTTGAAGTCAATGAATGCATCTTTTGCCAAAAACCTAAAGTCTACAAGCTCCGGGATAATTTACTTTATCATATGGCCCTTCATTCCAAAGACAGTATTAAATGTATTCcttgtatgaaatattttaagacaaaagaACTGCTTGAGGAACATCTGAATGAATGTTTTAAGGTGGATATTAAGAGTATTAAGTTAGATCTGGatgaaaactatgATGGTAGTGTAGTTACTCAGCTGCAAAATACTCAGTTATCCCAAAAGATACTGAAACAAACTCAATATGATGGTGCATTTAAATGTCAGCTCTGTCAAGAGCACTTAGGGGAAATTGACTCTGTAATAGAACATTTTGAAAAAGTCCATTTAGCAGACCTAAGTTGTATCATTTGTAAGAGGACATTCACAAAACCAGTGCCATTGTTTCACTTGGGGTTACATTCTACAAAGTCACATATATGCAGACCCTGCAGGTTATTTTTTAAGACTAAGGAGGAATATGATAATCATTGTGCTAAGTTTGATCATGATAAAAGCCTAACTTGTAAAATTTGTGGAAAGAAGTTTACTAGGAACTacaaaaagAATAAACACATGCTTAGTCACCTAAAAGAAAAGAACTACTCATGTAATAAATGTGGAAAGACATTTACTTATAAGACAAGTTTAGTAAGgcattttaaaatgcattttggTAAAAGGTTTCTTTGCTCTTCTTGTGGAAATGCTTATACAACAAAGTTCATGTTACAAAGGCACATTAGAATCATGCATACGATGGTTGATGAAGATGGAAAACCTCTGCCTAAACCACCACCAAAACCAGTCAAGCTTCAGTGTGAATTTTGTGGGGAAATATTTACAACTAAATATGGATATGGTAGGCATATAAGAAGGCATCCGGAGTTTAGGGAGTTCAAATGTAAAATTTGCTCTTTTATGTGTGATACAAGGgagCAGCTGGACGTTCATATGGAAGAGAAACACAACAAACACACTTGTGATGTTTGCGGAAAACGTTTTCCTTTTGAAAGCGAGCTTAAGACCCATCATAGGAAGCATGAAGACATGGAAAGTTCGCGTTTTAGATGTGATGTGTGCGGTAAGACAGCAAGGACACAAACCCAACTAAAAGTCCACTACAGAATTCATACAGGGGAGCGCCCATTCTCATGCGAAATATGTGGGAAATCGTTTAAACAAACGGCGCATCTTAAGGTGCACATGTTCCAGCACACTGGAAAAATGCCCTTCAAATGCATGGTGTGTGAAAAATCGTTTCCCTTTCAACATGTTATGGAGATCCATATGCGTACTCATACTGgtGAAAAGCCATTTTTGTGTGTTATTTGTGGGAATGCGTATCACGATAGGTCCACCATGCAAAAACATCAGAAAAAGAAGCATCCAGAAATGCCTATACAAAAAGTGGGAAGGTCTGATTATTCCATTAGCAAATTAGAGTAA
- Protein Sequence
- MQKNQFQLALSDFNKICRVCLTKSEGLQSVYEVNFPSEGHCDPLDVRKLFKKYCDLEVCPTDEKPQQICLVCIKLLYDSCNFFKKCTESNDVLEDIIRQETVKIEIESAKLEPALLKRKRTKSHDAKYHSESEDDVFVEDNDSDWDPSNDQENVDLKEDVFNAEKTKIDDDFNTSDEESLALKGKKITRKRKLEEKTRSKKLLTRRGRRKKTDQNEIKPDPDECDIENTSELVCRLCGLTLSDINASIEHYDESHAPELEVNECIFCQKPKVYKLRDNLLYHMALHSKDSIKCIPCMKYFKTKELLEEHLNECFKVDIKSIKLDLDENYDGSVVTQLQNTQLSQKILKQTQYDGAFKCQLCQEHLGEIDSVIEHFEKVHLADLSCIICKRTFTKPVPLFHLGLHSTKSHICRPCRLFFKTKEEYDNHCAKFDHDKSLTCKICGKKFTRNYKKNKHMLSHLKEKNYSCNKCGKTFTYKTSLVRHFKMHFGKRFLCSSCGNAYTTKFMLQRHIRIMHTMVDEDGKPLPKPPPKPVKLQCEFCGEIFTTKYGYGRHIRRHPEFREFKCKICSFMCDTREQLDVHMEEKHNKHTCDVCGKRFPFESELKTHHRKHEDMESSRFRCDVCGKTARTQTQLKVHYRIHTGERPFSCEICGKSFKQTAHLKVHMFQHTGKMPFKCMVCEKSFPFQHVMEIHMRTHTGEKPFLCVICGNAYHDRSTMQKHQKKKHPEMPIQKVGRSDYSISKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -