Basic Information

Insect: Anthonomus grandis
Gene Symbol: -
Assembly: GCA_030068095.1
Location: CM057955.1:9383447-9384412[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.9 7.5e+02 3.1 4.6 1 11 36 46 36 56 0.88

2 10 6.3e-07 0.00016 24.1 2.2 1 23 60 83 60 83 0.96

3 10 6.4e-07 0.00017 24.1 0.1 2 23 90 112 89 112 0.95

4 10 0.00024 0.064 15.9 3.0 1 23 119 142 119 142 0.95

5 10 0.00026 0.067 15.9 0.3 3 23 150 171 148 171 0.95

6 10 3.4e-05 0.0088 18.6 0.1 2 23 177 201 176 201 0.92

7 10 9.6e-05 0.025 17.2 0.9 1 20 208 227 208 230 0.93

8 10 1.7e-05 0.0044 19.6 0.5 1 23 237 259 237 259 0.98

9 10 4.1e-05 0.011 18.4 0.2 1 23 265 287 265 287 0.96

10 10 1.1e-05 0.0028 20.2 3.6 1 23 293 316 293 316 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.9	7.5e+02	3.1	4.6	1	11	36	46	36	56	0.88
2	10	6.3e-07	0.00016	24.1	2.2	1	23	60	83	60	83	0.96
3	10	6.4e-07	0.00017	24.1	0.1	2	23	90	112	89	112	0.95
4	10	0.00024	0.064	15.9	3.0	1	23	119	142	119	142	0.95
5	10	0.00026	0.067	15.9	0.3	3	23	150	171	148	171	0.95
6	10	3.4e-05	0.0088	18.6	0.1	2	23	177	201	176	201	0.92
7	10	9.6e-05	0.025	17.2	0.9	1	20	208	227	208	230	0.93
8	10	1.7e-05	0.0044	19.6	0.5	1	23	237	259	237	259	0.98
9	10	4.1e-05	0.011	18.4	0.2	1	23	265	287	265	287	0.96
10	10	1.1e-05	0.0028	20.2	3.6	1	23	293	316	293	316	0.96

Sequence Information

Coding Sequence: ATGCTGGAGGTTCTGTCCTGGTTGGAACTCAACCAATTGGCACCTCCTAAAGGTCATAGAAGATATAGAAACATTCTAATAAGAGTAATTTTTAGCACAACACGCTATCAGTGCAGAAAATGCCACATGAGTTTCAAACTGTACAAGGCCTGTCTCAACCACGAATGCCCGGACATATTCATTTGTCCCACGTGCGGCAAGTCTTTCGCAAAGCACCAATACCTCAGGAGACACATTAGGCTTACGCACTTAAAAAGTCAGAAGACCTCTTGCCCGGAGTGCGGCCTGGTTTTTACCAGGATCTCGAGCTTGAAACGTCACATCGAAGTGATCCACAAAGGGATCGAGACTTACCACCATTGCGAGGTGTGCGGTGAGAAGTTTAAGAGCAGAAGCAGCATCTTGAGGCACAAGAACATAATCCATTTGAAGAAGTTTCGGATCTTCTGCGATGTGTGCCAGAAGGGTTTTTATTTCAAAGGGGAGTTGAAGCAGCACAACCGGATTGCTCACGAGAAACACCCGGTGGTCTGTAAGGAGAAGGGGTGCGGCAAAGTCTTTCAGAACCCGAACAACTTGAGGTACCATCAAAACGCCGCGCACGTCGCCATCAAACCGAAGTTCGTTTGCGATCAGTGCGGTAAAACTTACGACCATCCGGCCTTGTACAAAAAGCACCTCTGGATGCACAAGACTGGACCAAGGGAATATCCTTGCACCATGTGCGAGAAGACTTTTCGCGTTAAGAAGAGTCTGGACATTCACGAACGTGTCCACACGGGGGAGAAGCCGTACGTGTGCGAACAGTGCGGGCAACAGTTCGCTCAACGGAATACCCTGAAGAGTCATTGGGTGGTTCATACCAAGGAGCGACCGTTTCCTTGCAAAGTGTGTGATAAGAAGTACACCCAGAAGACACCGTTAACCAGACATATGCAGCAGTGCCATCCAGAATTTAAGCGTTAA
Protein Sequence: MLEVLSWLELNQLAPPKGHRRYRNILIRVIFSTTRYQCRKCHMSFKLYKACLNHECPDIFICPTCGKSFAKHQYLRRHIRLTHLKSQKTSCPECGLVFTRISSLKRHIEVIHKGIETYHHCEVCGEKFKSRSSILRHKNIIHLKKFRIFCDVCQKGFYFKGELKQHNRIAHEKHPVVCKEKGCGKVFQNPNNLRYHQNAAHVAIKPKFVCDQCGKTYDHPALYKKHLWMHKTGPREYPCTMCEKTFRVKKSLDIHERVHTGEKPYVCEQCGQQFAQRNTLKSHWVVHTKERPFPCKVCDKKYTQKTPLTRHMQQCHPEFKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -