Agra041089.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057944.1:14624284-14638951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.1 1.8e+03 1.9 0.3 1 11 23 33 23 33 0.93 2 14 0.097 26 7.7 2.9 2 21 130 149 129 150 0.93 3 14 0.052 14 8.6 1.7 1 19 167 185 167 188 0.94 4 14 0.0021 0.56 13.0 0.3 1 23 232 254 232 254 0.98 5 14 0.00084 0.22 14.2 0.9 1 23 273 295 273 295 0.97 6 14 0.06 16 8.4 1.0 1 23 322 343 322 343 0.89 7 14 0.0011 0.29 13.9 0.2 3 23 351 371 350 371 0.97 8 14 0.00033 0.086 15.5 0.3 3 21 379 397 378 398 0.94 9 14 0.001 0.27 13.9 0.3 1 23 405 427 405 427 0.98 10 14 4.1e-06 0.0011 21.5 3.8 1 23 433 455 433 455 0.98 11 14 8.5e-05 0.022 17.4 1.9 1 23 461 485 461 485 0.92 12 14 1.4e-05 0.0036 19.9 0.2 1 23 491 513 491 513 0.98 13 14 6.8e-06 0.0018 20.8 0.3 1 23 517 539 517 539 0.98 14 14 0.00016 0.042 16.5 0.0 1 23 547 570 547 570 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGGAGCAGGATGATACAGTAACTGTTAAGGAAGAAGACAATGTCGACCCTACTGTGGTTTATTCCTGTGAAGCTTGTGATATGACTTTTACTTGTGTCGAGGAACACCTAGCAGAGTTTCATGAAGATGAGGAGGTTATATTGGAAACAGAAGAACCGGAGTCAGTAGATCAAGAAGAGGACAATGAGgaagaaatcacagaaaataaTGGAGAGGATCCACATAATAGTGTTGGAAACACCATAAGTCATGAAGAGAATGAACTGCAGGAACCAAAACCAGTTTTAACTAAATATGTTGTGAATTTTGgAGAAGCCCGAGAAATAAGTGAAGAAGAAGCTTGTAACTTAGATAAGACAGTAAAAGTTCTAGAGATACTTTCGTGTTCGAATTGCAAGTTGCAGTTTCCAAATATCACTCATTTTAACAAACATATTTGCTCTAATATAtcagaatttacaaaaaaaaacacagcaAAACTTTTAGAGAAACATTCATGTCCAAATTGCTCATTGCAATTTTCAAATATCACTCAGCTTAGAGAACATAATTGTTGGAATATTGAATATGAAAACAAGGTGAACACATCTAATAAGCAGAGCAAATCTAtcacaaagaaaaagaagaaaacaaagaaGCCAGTGGTAGAAGAGAACAAAACtgttgagcCGAACGTACCCTGCCGCTATCAATGCGCTCTATGTATGGTAGACTATGCCAGTAAATCGGAACTTAAGGAACATATGAAATCCCACTTGATTTATGATAGCTCAGGTTTGGTAAGCAAATCGATTATAACGATGTCCTTACACCCGTGTAATATTTGCGATATCAAATTTCCCACTTATAAAGAGATGCAATTACATGAGAAGATGCATTTACAAGAAGTGAGAATTGAATTTACATACAGTACAGGTGGcaaacaaaacaatgaaaaacaaacaattCGTGAAACATTTAATTGCGACATTTGTAATAAAGTATATgataaaaattatgaagaaaGTCACATGAAATCACATCTTGACGGGCTCGACAATCTTTGCTTGATTTGTAATAAAAGGTTCGAGCCAAGGGAAAACTTGGAAATGCATGTAAAAgCTCATTCCAAATcttcaaaattattatgttCCTATTGTAAAAAGACTTTTCCTAGATATGAGCTATTAAAACAACACGTGGAAACTCAATGCCAGAAGCGAGATTTTGAATGTTCATTTTGTGGCAGGAGATTTGCTAAACCCACCGACAAGGCTATCCATGAACGAATCCACACCGGCGTAAAACCGCATGTATGCGAGGTTTGTGGAAAATCCTTTAGAATTAGTTACTGCTTGACATTACATATGCGGACACATACAGGAAACCGGCCATATGCTTGCACTTTTATGGCATGCAATAAACGgtttaaatCTTTAAGTATGTTAACCAATCACCAAAAAACTCATTCAGATGTTAGGAATTACAAGTGTCCATACTGTCCCAAGGCGTTTAAAACTATTGTCCAATTAGCTGGACATAAAAACAGTCATACAAAACCATTTTCTTGTAAGGAATGTAATCGGCCGTTTTCGTCTTTATACGCGGTAAGGGCGCATATGGAAACCCATAAACGGAATAATAATCTAAAATTCGAATGTTGGATTTGTGGAGCGAGTTATGCAAGATCTTTTGCCCTTAAGGATCATTTGAACGAGGCGCATCCACAAGAAGCCAATACCGTAGAAACTCAAGACCTACAAGCCGTTATGCAGCTGGACGCGTCCACAGAAGAAATTCAAAATCCCGAAAATGTAGAGGAAGCGATGAATCAATGTGAGGGAATTCAGACAGTTCATATTGCTGGACAACCAAATGTCGAAGAACAGGGAGAATACGAAATAGCTgAAGATAAAGTTGGCATATGCAATGTGCAAGTTATAACTTCTGAAGATTCAGTGCTGTATGTTGACGAAACGCCGAAAACTAATGCAATGGTCGCCGTAGAAGCTGAAGTTAAAGTAGAACCATAA
- Protein Sequence
- MDQEQDDTVTVKEEDNVDPTVVYSCEACDMTFTCVEEHLAEFHEDEEVILETEEPESVDQEEDNEEEITENNGEDPHNSVGNTISHEENELQEPKPVLTKYVVNFGEAREISEEEACNLDKTVKVLEILSCSNCKLQFPNITHFNKHICSNISEFTKKNTAKLLEKHSCPNCSLQFSNITQLREHNCWNIEYENKVNTSNKQSKSITKKKKKTKKPVVEENKTVEPNVPCRYQCALCMVDYASKSELKEHMKSHLIYDSSGLVSKSIITMSLHPCNICDIKFPTYKEMQLHEKMHLQEVRIEFTYSTGGKQNNEKQTIRETFNCDICNKVYDKNYEESHMKSHLDGLDNLCLICNKRFEPRENLEMHVKAHSKSSKLLCSYCKKTFPRYELLKQHVETQCQKRDFECSFCGRRFAKPTDKAIHERIHTGVKPHVCEVCGKSFRISYCLTLHMRTHTGNRPYACTFMACNKRFKSLSMLTNHQKTHSDVRNYKCPYCPKAFKTIVQLAGHKNSHTKPFSCKECNRPFSSLYAVRAHMETHKRNNNLKFECWICGASYARSFALKDHLNEAHPQEANTVETQDLQAVMQLDASTEEIQNPENVEEAMNQCEGIQTVHIAGQPNVEEQGEYEIAEDKVGICNVQVITSEDSVLYVDETPKTNAMVAVEAEVKVEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -