Agra071694.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- znf711
- Assembly
- GCA_030068095.1
- Location
- CM057955.1:9348327-9350844[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.6 1.2e+03 2.5 0.3 14 23 4 14 2 14 0.88 2 19 0.0015 0.39 13.4 1.8 1 23 27 48 27 48 0.98 3 19 9e-07 0.00024 23.6 5.7 1 23 54 76 54 76 0.99 4 19 4.1e-05 0.011 18.4 0.1 1 21 82 102 82 102 0.94 5 19 5.7e-05 0.015 17.9 0.4 2 23 104 125 104 125 0.94 6 19 0.027 7.1 9.5 0.6 1 23 134 157 134 157 0.96 7 19 0.93 2.4e+02 4.7 0.4 2 13 167 178 166 186 0.82 8 19 0.00078 0.2 14.3 0.7 1 23 198 220 198 220 0.99 9 19 1 2.6e+02 4.5 0.7 2 23 233 253 232 253 0.86 10 19 0.0077 2 11.2 8.2 1 23 259 281 259 281 0.98 11 19 2.1e-05 0.0054 19.3 1.2 1 23 287 309 287 309 0.98 12 19 0.0027 0.7 12.7 1.4 1 19 315 333 315 336 0.93 13 19 0.42 1.1e+02 5.7 0.1 1 18 377 394 377 394 0.91 14 19 0.0084 2.2 11.1 0.6 2 23 405 426 404 426 0.95 15 19 0.018 4.8 10.0 1.0 1 20 530 549 530 551 0.94 16 19 0.0042 1.1 12.0 0.1 2 21 558 577 558 580 0.88 17 19 0.0094 2.5 10.9 1.5 3 23 586 606 585 606 0.97 18 19 0.023 6.1 9.7 6.1 1 23 612 635 612 635 0.95 19 19 0.00046 0.12 15.1 3.2 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGTCCTTCAAATACTTGGAGGCTCACATGCGCAAGAGGCATGCGAACGATGAGAGGTATCCGTACTTATATAGACGATATTGTTGTGATATTTGTGGAAAGGAGTTACTCAAGAAGAACCTCAAGGTTCACATGATGTCCCATAAAGGCGAGAAGCCTTATACCTGTGACCACTGTGGCAAGAGCTTCGTGACGCGAGTGTGCCTAAAGACTCACTTGAGGACTCACACCAATGAGAAGCCTTATTTGTGTCCGATTTGTGGCAAGGGCTTCTCTCAAAAGTACTCGGTGACGGTACACGTGAGGCCCACATGCAAGATCTGCTTCAAAATCTTCGCCTCCCCAGGTAACCTGAAGCGCCACTCGTACATTCACTCGGAGATGAAGCGCTTCGAACGGTTCACTTGCAGCATCTGCGAGTTGGAGTTCAAATCCAACCCCGTGATGCAGGaccattttaaaaagttacaccAGCTCGATGATCATTTAGATCCAGACAGCTGTCCCTTCTGCGCCAAATCCTTCAAGAGCTACCAGAAAGCTCTCAAGCAGCACGTCTGGAACGAGCACGATCCGCAATACAAATTCAAGTTCCAGTGTTCGGTTTGTGATAAAATTATGAGCTACGAGCAGAGTTATATCAAGCACATGCTAACCCACGACGTGGAGGAGCCTGATTACCGAAAGAGACGTTGCGTATGCGAGATATGCGGCAAAGAGGTCCTCAAGAAGAACATAAGGCCTCACATGAAGGTCCATCTGGGAGTCAAGCCCCATAAATGTGATTTTTGTGATAAACACTTCGGCAATCGGAAGATCTTGAGGCACCACATCCGGACTCACACCAAAGAAAAGCCCCACAAGTGCCCCGTGTGCTTAAAAGGCTTCACCCAACCGTATACTGTGACCATTCACATGAGATATCATACGGGGGAACGTCCGTTCTCGTGTTTTGTCTGTGGGAAGGGGTTCGTCACCAAGGCGGAGGTGAAGAACCACAACTGTAAAGGTCCAGTAATAGAGCAGCAGAGCGAGGAGGACGATAGACGGGGTTTTGTGAAGACTGAAGGCTTCTTCAATAACTCCTTCCTCCTAGAAGACCCCTCCTCCCTGGACGCCTTGGAGCAATACCAGTGCGGCATTTGCTCAGCCATCTTCGCCTCCGAAGATGACTTCAATAAGGAACACattgacatttttttcaaaacgttGACTTGCTGCGTATGCCAGAGAATATTCGATAGTCTGGATGATCTCTACGATCACCAAGAGGGGCACAAAGACGACTCTTCGGCTAAAATGGATAACTTGTTGTTTCTGGAAACCGAGGAAGGCCAAGAGATCTTTCAAATCCCTGAGGATGACATGGTGTACATCCTGAATGAGTCCAGCGGTAAAAAGGCTTTGGAGCTGGATCAAACGATTAGTTTGGACCACGGATATGTCTCCAAGAAAGTCGAAACTGTCCACAAGAAGAGCATCCCGAGGCCTCGTCCCTCTTCTCTAACCGCAAAACGTTCGGATCCGAACTTTTCCGCTACGGAATACGTCGTAATCGAACCCAACGAGAAACTGGACTTTGTCCACTATAAATGTCAACATTGCGAGCAATTGTTTATTAACAAGCCGGCCTTCTATCGCCACGTGGAGAAGGGAAAGTGCTACATTAACAGTTGCGACGTATGCAACGAGAGGTTCGTGCAAAATGGCGACTTCTTCGCGCATTACGTGGCCGAACATCGGGATCGTGCCATTTGCAATTTCTGCTTCCGGACTTTTATGTACGAGAAGAACGTCCGGGAGCACATGCTGCGCCACCTGGATCAGTTCAGGCACGTGTGCGATAAGTGCCACAAGGGCTTCTACACTGTCCGGGAGTACCGGAACCATTATAAGAACAGACACATGGGGATCAGGCATCAGTGTGACTTATGCGAAAGGAATTTTGCCGATGAGTATTATTTTAAGAAGCACAGGGAGACTCATAGGGAGAGCAGTGAGTCGGTGGTGCGTTTGCTAACTCTTAGCAATGTCTAA
- Protein Sequence
- MSFKYLEAHMRKRHANDERYPYLYRRYCCDICGKELLKKNLKVHMMSHKGEKPYTCDHCGKSFVTRVCLKTHLRTHTNEKPYLCPICGKGFSQKYSVTVHVRPTCKICFKIFASPGNLKRHSYIHSEMKRFERFTCSICELEFKSNPVMQDHFKKLHQLDDHLDPDSCPFCAKSFKSYQKALKQHVWNEHDPQYKFKFQCSVCDKIMSYEQSYIKHMLTHDVEEPDYRKRRCVCEICGKEVLKKNIRPHMKVHLGVKPHKCDFCDKHFGNRKILRHHIRTHTKEKPHKCPVCLKGFTQPYTVTIHMRYHTGERPFSCFVCGKGFVTKAEVKNHNCKGPVIEQQSEEDDRRGFVKTEGFFNNSFLLEDPSSLDALEQYQCGICSAIFASEDDFNKEHIDIFFKTLTCCVCQRIFDSLDDLYDHQEGHKDDSSAKMDNLLFLETEEGQEIFQIPEDDMVYILNESSGKKALELDQTISLDHGYVSKKVETVHKKSIPRPRPSSLTAKRSDPNFSATEYVVIEPNEKLDFVHYKCQHCEQLFINKPAFYRHVEKGKCYINSCDVCNERFVQNGDFFAHYVAEHRDRAICNFCFRTFMYEKNVREHMLRHLDQFRHVCDKCHKGFYTVREYRNHYKNRHMGIRHQCDLCERNFADEYYFKKHRETHRESSESVVRLLTLSNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -