Basic Information

Insect: Anthonomus grandis
Gene Symbol: -
Assembly: GCA_030068095.1
Location: CM057955.1:9292515-9294254[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0034 0.88 12.3 1.2 1 22 12 33 12 34 0.87

2 16 6.4e-05 0.017 17.8 1.2 1 23 40 63 40 63 0.96

3 16 0.00021 0.056 16.1 1.7 1 23 75 98 75 98 0.94

4 16 0.025 6.6 9.6 0.6 3 23 109 129 108 129 0.97

5 16 8.7e-05 0.023 17.3 0.7 1 23 135 157 135 157 0.97

6 16 1.4e-05 0.0037 19.8 0.9 1 23 163 185 163 185 0.98

7 16 0.0015 0.4 13.4 0.2 1 21 191 211 191 212 0.94

8 16 0.83 2.2e+02 4.8 0.1 2 23 266 287 265 287 0.88

9 16 0.0069 1.8 11.4 4.3 1 23 293 315 293 315 0.99

10 16 0.0039 1 12.1 1.5 1 23 321 343 321 343 0.90

11 16 0.00013 0.033 16.8 1.3 1 23 349 372 349 372 0.96

12 16 0.00037 0.097 15.4 1.9 1 23 384 407 384 407 0.90

13 16 0.0028 0.73 12.6 0.2 3 23 418 438 417 438 0.98

14 16 3.3e-06 0.00085 21.8 1.2 1 23 444 466 444 466 0.98

15 16 5.4e-05 0.014 18.0 0.5 1 23 472 494 472 494 0.98

16 16 0.0015 0.4 13.4 0.2 1 21 500 520 500 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0034	0.88	12.3	1.2	1	22	12	33	12	34	0.87
2	16	6.4e-05	0.017	17.8	1.2	1	23	40	63	40	63	0.96
3	16	0.00021	0.056	16.1	1.7	1	23	75	98	75	98	0.94
4	16	0.025	6.6	9.6	0.6	3	23	109	129	108	129	0.97
5	16	8.7e-05	0.023	17.3	0.7	1	23	135	157	135	157	0.97
6	16	1.4e-05	0.0037	19.8	0.9	1	23	163	185	163	185	0.98
7	16	0.0015	0.4	13.4	0.2	1	21	191	211	191	212	0.94
8	16	0.83	2.2e+02	4.8	0.1	2	23	266	287	265	287	0.88
9	16	0.0069	1.8	11.4	4.3	1	23	293	315	293	315	0.99
10	16	0.0039	1	12.1	1.5	1	23	321	343	321	343	0.90
11	16	0.00013	0.033	16.8	1.3	1	23	349	372	349	372	0.96
12	16	0.00037	0.097	15.4	1.9	1	23	384	407	384	407	0.90
13	16	0.0028	0.73	12.6	0.2	3	23	418	438	417	438	0.98
14	16	3.3e-06	0.00085	21.8	1.2	1	23	444	466	444	466	0.98
15	16	5.4e-05	0.014	18.0	0.5	1	23	472	494	472	494	0.98
16	16	0.0015	0.4	13.4	0.2	1	21	500	520	500	521	0.94

Sequence Information

Coding Sequence: ATGCACGTGAGGACCCACGAGGGTACCACCAAGTATAAGTGTGAAGTGTGCCAGAAGGCTTTTACCACCAGTGTCTACGCGTTGGAGCACAAGTACTTCCACACCGGAGAGACTCCATTCCACTGTGAGATCTGCGGGAAGCAGTTCATGTATTCCAGACTTTTGGCTGCACACAGACGCAACATTCACTACGAACTGTTGACCGGACAGCCGTTGGTGAAGCACGATTGCAACATTTGCGGCATTCATTATGCTTCTGCTTCCGGTCTTCGCCGACACAAACTGAGCAAACATAGCGAGCAACCGGTGGATTTGTCGGTACTCTGTGACATTTGTGGCAAGAGGTTGACCAGTAAGGAGAGGCTCGTTTTCCACAGACGTATCCATACTGGTCATAAACCGTTCGCTTGTCATATATGTCCTAAAAAATTTACGGCAAGGGACCGGCTTCTGGAACATGTGAGGGTACATACGGGGGAGAGGCCCTTTATTTGTAAATTCTGTGGAAGAGGATTCACTCAGAGGACCCCCCTAAGAGTTCACGAGAGGACACATACTGGAGAGAGGCCTTACGTGTGCAAATATTGCAGTAAAGGGTTTATTACTAAAGGCCTGATGGATGGCCATATGAAGAATTGTAAAGTTAAAAAGTGTACTGAGATAGACataaaactagaaataaaaGAGGAAGACGCCAGTGACAGTTTTAACCCCCACGAATTCATGTCCAGAAGAAACTCTAAGAAGAAACAGAAAAAGGACCACCCTCCACCAATGGAACTGGAGGAGCCAATCGAGTGCGAACTCTGCAATAACGCCTTCAAAAACAACATTATCTTTGCCCTCCACACCCTTCGCCACAGCCAAGATGGCAAGTACTACTGTCATTTGTGTTCTTACAGGAGCAGCTCGCAGTACAGTATTAAAATGCACGTGAGGACCCACGAGGGTACCACCAAATATAAGTGCGAAGTGTGCCAGAAGGCTTTTGCGACCAGTGTTCACGCGTTGGAGCACAAGTACTTCCACACCGGAGAGACTCCTTTTCACTGCGAGATCTGCGGGAAGCAGTTCATGTATTCCAGACTTTTGGCTGCACATAAACGCAACGTTCACTACGAACTGTTGAACGGAGAGCCGTTGATGAAGCACGATTGCAACATTTGCGGTATTCATTATTCTTCTGCCTCTGGTCTTCGCCGACACAACCTGAACAAACATAGCGACCAACAGGTGGATTTGTCGGTACTCTGTGAAATTTGCGGCAACAGGTTGAGCAGTAAGGAGAAACTCGCTGTTCACAAACGTATCCATACTGATTATAAGCCGTTCACTTGTCATATCTGTCCCAAAAAATTCATGACGAGGGACTTGCTCCTGGTACATGTCAGAATTCATACGGGGGAGAAGCCCTTTATTTGTAAGCTTTGTGGAAGAGGATTTACTCAGAGCACCCCCATGAGAGTTCACGAGAGGACACATACTGGAGAGAGGCCCTACGTTTGCAAATATTGCAGTAAAGGGTTTATTACTAAAGGCCTGATGGATGGTCATATGAAGAATTGTAAAGCTAAAAAATCCTCTGAGTGA
Protein Sequence: MHVRTHEGTTKYKCEVCQKAFTTSVYALEHKYFHTGETPFHCEICGKQFMYSRLLAAHRRNIHYELLTGQPLVKHDCNICGIHYASASGLRRHKLSKHSEQPVDLSVLCDICGKRLTSKERLVFHRRIHTGHKPFACHICPKKFTARDRLLEHVRVHTGERPFICKFCGRGFTQRTPLRVHERTHTGERPYVCKYCSKGFITKGLMDGHMKNCKVKKCTEIDIKLEIKEEDASDSFNPHEFMSRRNSKKKQKKDHPPPMELEEPIECELCNNAFKNNIIFALHTLRHSQDGKYYCHLCSYRSSSQYSIKMHVRTHEGTTKYKCEVCQKAFATSVHALEHKYFHTGETPFHCEICGKQFMYSRLLAAHKRNVHYELLNGEPLMKHDCNICGIHYSSASGLRRHNLNKHSDQQVDLSVLCEICGNRLSSKEKLAVHKRIHTDYKPFTCHICPKKFMTRDLLLVHVRIHTGEKPFICKLCGRGFTQSTPMRVHERTHTGERPYVCKYCSKGFITKGLMDGHMKNCKAKKSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -