Agra057645.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057949.1:27470736-27487575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.063 15.9 4.1 2 23 120 142 120 142 0.97 2 11 0.00015 0.038 16.6 0.7 1 23 223 245 223 245 0.97 3 11 0.00024 0.064 15.9 1.5 1 23 251 274 251 274 0.95 4 11 1.9e-06 0.0005 22.5 1.1 1 23 279 301 279 301 0.97 5 11 2.2e-06 0.00058 22.3 4.3 1 23 310 332 310 332 0.98 6 11 3e-06 0.00078 21.9 1.0 1 23 339 361 339 361 0.93 7 11 1.1e-06 0.00028 23.4 1.6 3 23 373 393 371 393 0.96 8 11 3.4e-05 0.0088 18.6 4.5 1 23 399 421 399 421 0.99 9 11 2.1e-05 0.0054 19.3 1.7 1 23 427 449 427 449 0.96 10 11 3.2e-07 8.3e-05 25.0 0.4 1 23 455 477 455 477 0.99 11 11 0.0002 0.053 16.2 0.1 1 22 483 504 483 507 0.91
Sequence Information
- Coding Sequence
- ATGAAAATGTCACATCCTAATGTCCGTTCACTTCTGCCACATATTGAAGACTTTAGAGATCTGATGCTTCAGGGTTCTGATGCCATAATAAGCGTTACCGAGACTTGGCTGAATTCAAATATAGATTCAGCTGCGGTAGCTCTTAGCGGATATATTGTAAATAGGAAGGATCGGTGTCAGGGCAGGAGGGGTGGAGGCGATGTTAAAATCGAAGTTCTCATCGGTTTGCCACGATTGGACTTTTTAGCTGGTGTTCCTTGTTTCAGTGAGCCAGATAGTCGCACTTTTTGTGAAAGTGAAGCAGAAGAGTTGGTACCTGATGTGCTAGCCACTGCCGAAGGCTCAGAAGTTGTCAGACAATGTGAGTTTTGTGACagaaaattcaaatacaaaaaaagcttTCTTCACCATATGCAAGTTGAACATGGTCTTTCTGACGCAGACAGTGACAACGAAGTGACATGTGAGAAGTCTCAAGAAAATACAGAACCTACCagtgatattaatattaaaaataatttagaaaatacagagtCAGAACTAATTAAAGACAGCGAAACTAGCAATGATGCTATCTTAGCcgaaattatgcaaaaaattgAGCCTTCAGATGACATGCAGGAAATTACGCATTTAGATgaggaaacaaaacaaaaaattaaaatttatacttgCGAGGTGTGTAGTGCTCAATTTGCAAGGGCAAATCATTTGGATCGTCACATGACTTTGCATAGAAGTCTTTTAAATCATAAATGTGATCAGTGTGAGCAgTCATTTTATACTGAAGCTCTGTTGAAACAACATATAGAACAGCAGCATGTCAATAAAccgtatatttgcacaatttgcAATAAACCATTCAGCAGGGGAGAACATTTAATACGTCACCTTAAGCTCCATCAGGAGGTTAATGAGGAGGGCCAGCATAAGTGTTCGATATGTGAAATGGTATTTACCAGGTCGGATCATCTTGCGCGGCACACAAAAACTCATTTGATGCAAGACAAACGTCATGTGTGTATAGAGTGCGGCAAAGCATTTAACCGACTAGATAACCTGAAAACTCATCAAAGAATACATACCGGCCTTAAAGATAATTCGAAGCTACATTTATGTGTTTATTGTGgcaaagaatttaataattccAGTAATATGattGTTCATATGAGGAGACACACAGGTGAACGGCCCTATAAGTGTAATGAATGTGGTAAAGGATTTCCACGATCCCACGACTTAAAATGTCATGAGAGGACACATAGCGGAGAAAAGCCTTATTTATGTACCTTATGTGGCAAGTCGTTTAACAAAAGCAATAAAttgttacgGCATAGCCGAGTTCATACAGGGGAACGTCCGTATGTGTGCAACATCTGTTCACGTGCGTTTACCCAGTCGAATGATCTGGCCTTGCACATGCGCCGACATACTGGAGCCAGACCGTATGCTTGCGGGGTTTGTCCTGCTAGATTTATACAGAGCGGACAACTTAAAAATCATCGAAGGCAAACTGGACATTGGATGGAGACCATGCCAGATTTAAAAGGCGGTCATAGGTAA
- Protein Sequence
- MKMSHPNVRSLLPHIEDFRDLMLQGSDAIISVTETWLNSNIDSAAVALSGYIVNRKDRCQGRRGGGDVKIEVLIGLPRLDFLAGVPCFSEPDSRTFCESEAEELVPDVLATAEGSEVVRQCEFCDRKFKYKKSFLHHMQVEHGLSDADSDNEVTCEKSQENTEPTSDINIKNNLENTESELIKDSETSNDAILAEIMQKIEPSDDMQEITHLDEETKQKIKIYTCEVCSAQFARANHLDRHMTLHRSLLNHKCDQCEQSFYTEALLKQHIEQQHVNKPYICTICNKPFSRGEHLIRHLKLHQEVNEEGQHKCSICEMVFTRSDHLARHTKTHLMQDKRHVCIECGKAFNRLDNLKTHQRIHTGLKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCNECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRQTGHWMETMPDLKGGHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -