Agra056931.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057949.1:21247970-21301032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00031 0.082 15.6 1.1 2 23 253 274 252 274 0.96 2 16 2.7e-05 0.007 18.9 3.8 1 23 279 301 279 301 0.97 3 16 0.00044 0.11 15.1 4.3 1 23 307 329 307 329 0.97 4 16 0.014 3.7 10.4 2.9 1 19 335 353 335 354 0.97 5 16 1e-05 0.0026 20.3 0.6 1 23 363 385 363 385 0.96 6 16 0.019 5 10.0 0.1 1 23 703 726 703 726 0.94 7 16 2.8e-05 0.0074 18.9 7.5 1 23 1061 1083 1061 1083 0.97 8 16 4e-05 0.01 18.4 5.6 1 23 1089 1111 1089 1111 0.97 9 16 1.6e-05 0.0041 19.7 1.8 2 23 1118 1140 1117 1140 0.93 10 16 0.092 24 7.8 0.6 1 23 1154 1176 1154 1176 0.97 11 16 0.00066 0.17 14.6 4.0 1 23 1182 1204 1182 1204 0.97 12 16 3.8e-06 0.00099 21.6 0.5 1 23 1211 1233 1211 1233 0.96 13 16 2.4e-05 0.0062 19.1 1.3 1 23 1239 1261 1239 1261 0.98 14 16 1.3e-06 0.00033 23.1 0.8 3 23 1269 1289 1267 1289 0.96 15 16 1.5e-05 0.0038 19.8 0.2 1 23 1295 1317 1295 1317 0.99 16 16 0.48 1.2e+02 5.6 0.4 1 23 1322 1345 1322 1345 0.92
Sequence Information
- Coding Sequence
- ATGAGATTAGCCTCCGCCTGCTATGCTATTAGATTGATCCATTGTGAACTTAACAAAAGGATAgcaaataatgtttattttgccCTGGTAGGAGTGGCGAGGAGTCTCAACTATGCTATGGAATTCAATTTTGGGGTTATGCAAGCCTTCAGCTCTTACAATCCCTTTTTCTATTGCAGAAGCAAGAGGGCTAACCACAGTTGTGCCACGGCCTTGTTGAAAATAACTATTGATATCGCAAGGTCCTTTGATAATGGTCACTGTTGCCCAACACTGCTCATTGACATGACCAAAGCTTTTGATACGTTAAACACTGATAAGGCTAATGGATGGTTTGGCAGCTATCTGGGAAATAGGGAACAGGCAATTGAACTTGGTGACGGTTTACCTAATCTTATGTGTGAGATGTGCTGCCAAAGCTTGAAAAACGCTTATGACTTTAAAAGACAATGTGAAGCAGTTGACCATAGTCTAAGGGAATACTGCAAAAATATGAAAGTTAATGCTATAAAACAAGAGCTACAAAATACAGATTTCATGGAATCCCTCAACACCTTAAGCAATTTGTTAGTTGATGATACTACTTCGAATGCTCCTAATaatccaacccaaccccaaACCAAAGAGGCAACAAAAACTGTAACTGAGACTCAAACTGATACTACATCTACTGCATCTGCAGAAAATGAAGGCAAGCCTAACATTCATCCAGAGACTGACTACATTCAGTTTTTGGACAACAATCAGATGCTTCTTACATGTAGGGAATGTACAAAAATGTTTACTACTTTAGAGGGGCTAAGATCGCATAAACGTGCGCACGCAGGTAATACTTTCAAATGTAAACAATGTGATAAAGAATATACGAGGAAGAACCATTTGGAACGTCATGAGGCCTCTCATGGCAAGAAGAAAGTTCATGTGTGCAAAATTTGCAGTAAAACGTTAACCCGAATGGAGCACTTAAAGCGGCATCTTGTAACCCACTTAAGAGAAAAACCTTTTCAGTGTAAAACTTGCAATAGAGGATTCAATAGGATTGAGCATTTGCATAATCACAGCCCTAGGTGTAAAGGTGAAGTAGTTCATGTTTGTCCAGTTTGTAATAAAGCTTTTACCAGGGAAGACAGTCTGGAAGTTCACAAGCAACAGCATGATAAAGCGTTATTGTCTTTACCTACTATAGACAATTTGGATAATATTGAACAACATTATTTTGAGGTTGATTACGATGCCAGCGTGAACTTCTCAGACAATTCAGACCTCGAGGATTGTTTTGAGCCGCAAGTAGAAGTCACCGAAAGTGCTGGAGATGCAAAACTAGAAGAAGCGAAAGACGTAGGAGTAGTAGAAATCaatgAGGAAAAACTTCAGGACACTGGTTTTTCTGACTCCCAAGCAGAAGACGTCGAAGAAGAGTGCATAGAAATTCGGCAAGAAATGGATGAAGACGATGAGGAAGAAGATGATGAAAAACCCTTAGCGACATTAGCTGGAATAGTGAAAGCCGAAAGTAATGACAACAAAATTTTGTTGCTGGTAGAAGAAAATGAACGCGGCGATTATAATGATACCACCATTATGGATGTTGCGAGGGAGACTGAAGTAGAAAATGAGGATTTAGGTGGAGATGGAATACCTGTTGAGGCTGCCATTGATAGTGGGGAGTTTGACAACTTTGAAAGCTATGACCAGGAAAATGGGTTTCATGAAGCTATGGAGATTGCAGTATTGGGGGAAGTTGCAATGGATAGTACGTTAAGTACAAGACAATTGGCCATTGCAACGGGTGTATCTCGAATAAGTGTCCAAAGGGTATTGAAGAAATACAAGTTCCATCCCTATAAAATTCGCTTAGTGCAAGAAttgaatgaagacgactttgaTCGTCGCTTGCAGTTTTGCGAAGTTATGACTGACAGTTCTCAAGAAAGTTCAGACGAAGAATATAAACCTCCAGTTCAAACGTCTCCGAATGGTAAGAGGCGAGGTAGGCCTAGAATTCACCCTCCTAAACCTAAAGGGACTGGAAAAAGAGGCAGACCAGTGGGCAGTAAAGGTATTAAAAAGAAACCAAAAGTCGTCGAAGAAGAAGAGATCGGAGAGTTTCCTTGTCCTTTGTGCTTGGAATTTTTCGATAGGATCAGTCAGTTGGATAAGCACGCGAAAGAAGTGCATCCTGGTCTTAAGATGTCGCCAAAGAAATTAGGTACGAAAGGGCAAATAATACATAGCCAGGGAAGAGAAATTATTGCCAATGTAGCAGAGTTTATGCATAAAGAGGCAGAAGAAGGATTAACTATTCCTTTAAAACGCTTTAGatGGAAGAAGACAGATGATAATAGAAAGGCCTTGATGGAATCATATGACATACGTTTGAAgagaataaaatacttaaaacaaattaccgaatttaaaaatcaagGTAGAAATATAGTGTATACTGACGAAACCTATATACACAGTAGTCATACTTCTGACAAAGGTTGGTTTGACGAAAGCCTAAGCGGTATACGAAAACCCATTTCAAAAGGACAGCGATTAATCATCGTTCATGCTGGaggaaaaaatggttttgttaaaGACGGTCTACTTATATTCCGCTCAgGTTCTAAAAGTGGCGATTACCATGACGACATGAATCatgaaaatttcatgaaatgGGTGGAAACCCAATTACTTCCGAATTTGCCACCAAATTCGGTCTTAGTTTTGAACAATGCATCATACCATAATGTACAAGTAAAAAAGAATGTTACCTCAGGAAGTAAGAAACAACTCATAATTGATTGGCTTAAGGAGCATAATTTAGAACATGAcgagaaaatgacaaaaacggaactttatgaaatagttcttcaaaataaaagattttatccGATAAAGTGCAAACTTGACGAACTAATGGAAAGTCACGGACACTCAACTTTGCGTTTGCCTCCATACCACCCAGAATTAAACCCCATTGAAAAAATCTGGGCCACTGTTAAAAACTGGGTAGCAAGCAGGAACACAACTTTTAAGTTAGCAGATGTAGAAGCTTTGACGAGGCAAACATTTGCAGAAGTATCTGTCGATGATTGGAGAAGCATTTGTGACCATGTCGACAAAATTGAagacaaatatataaaagatcATAATCTTTTTGATGAAACTTTAGATTCCCTAAAATTTACGATCCACACATGCCATGTATGTGACAAACAGTTTTCACGACCGAATCACCTCAAACGACATCTGACGTCGCATTCTGAAGAGAAACCTTTTTGCTGTGAGATTTGTACAAAGAGTTTTGTACGGAAAGATCACCTTTTGCAGCATCAGAAGTTACACGAGCAGCAAGAGGATATACCATGTGACGTGTGCGGCAAGTGTTTTAATAGGGCGGACCATCTTGCAAAACATAAGGCCTCTAGACATGGTATTGGAGATAAAGTTAcgGTCATGGGTGAGAAAAAGTATAACTGTGAAATCTGCATGAAAGGATTTACCACCGAGAAGTACCGCGACGTTCACATGAAAGCCCACAAAGGCGACAAACAGTACAGCTGTAGAGTGTGCGAAAAATCGTTCCTTTCAAAATCCCACCTCACCGAACACATGAAGTTCCACAACGAGCACTCCAAGAAATTCCTTTGTTCTGAATGTGGACAAAGGTTTATCCGAAACGACTATTTAGTTATACATATGAGAAGACACAGAGGtgaaaaaccatttaaatgtaaattctGCGGCAAAGGATTCCCTAGAACAACGGATTTGACGGTACACGAACGTTACCATACTGGGGAAAAAACTCATTTATGTACTGTTTGCGGCAGAGGATTCGGAAGGGCATATAATTTAACAGTGCATATGCGAACGCATACGGGGGAGAAGCCGTACAGATGTACGTATTGCGATGCGGCGTTCGCGCAAGGCAACGATTTAAAAGCTCACATAAGGAGGCATACGGGAGAGAGGTTCCAGTGCGATTTGTGTACTGAGAGTTTCTTAATGGGTTATTTGTTGACGCAGCATAAGAGAGCTGTTCACGGCCATGGACTGACGGCCATAACGGCAGGCAATGGACGAGGGAGGCCACACACTATTCAGTGGGCCTTTAGGGTCAAAACCCAAAGAATTGGTCCTTCAGATCGTTGCCTGCAGGCGACCCCAAACATGTCCACACACTCTCAGTCGATCGTAGTTTCTTGA
- Protein Sequence
- MRLASACYAIRLIHCELNKRIANNVYFALVGVARSLNYAMEFNFGVMQAFSSYNPFFYCRSKRANHSCATALLKITIDIARSFDNGHCCPTLLIDMTKAFDTLNTDKANGWFGSYLGNREQAIELGDGLPNLMCEMCCQSLKNAYDFKRQCEAVDHSLREYCKNMKVNAIKQELQNTDFMESLNTLSNLLVDDTTSNAPNNPTQPQTKEATKTVTETQTDTTSTASAENEGKPNIHPETDYIQFLDNNQMLLTCRECTKMFTTLEGLRSHKRAHAGNTFKCKQCDKEYTRKNHLERHEASHGKKKVHVCKICSKTLTRMEHLKRHLVTHLREKPFQCKTCNRGFNRIEHLHNHSPRCKGEVVHVCPVCNKAFTREDSLEVHKQQHDKALLSLPTIDNLDNIEQHYFEVDYDASVNFSDNSDLEDCFEPQVEVTESAGDAKLEEAKDVGVVEINEEKLQDTGFSDSQAEDVEEECIEIRQEMDEDDEEEDDEKPLATLAGIVKAESNDNKILLLVEENERGDYNDTTIMDVARETEVENEDLGGDGIPVEAAIDSGEFDNFESYDQENGFHEAMEIAVLGEVAMDSTLSTRQLAIATGVSRISVQRVLKKYKFHPYKIRLVQELNEDDFDRRLQFCEVMTDSSQESSDEEYKPPVQTSPNGKRRGRPRIHPPKPKGTGKRGRPVGSKGIKKKPKVVEEEEIGEFPCPLCLEFFDRISQLDKHAKEVHPGLKMSPKKLGTKGQIIHSQGREIIANVAEFMHKEAEEGLTIPLKRFRWKKTDDNRKALMESYDIRLKRIKYLKQITEFKNQGRNIVYTDETYIHSSHTSDKGWFDESLSGIRKPISKGQRLIIVHAGGKNGFVKDGLLIFRSGSKSGDYHDDMNHENFMKWVETQLLPNLPPNSVLVLNNASYHNVQVKKNVTSGSKKQLIIDWLKEHNLEHDEKMTKTELYEIVLQNKRFYPIKCKLDELMESHGHSTLRLPPYHPELNPIEKIWATVKNWVASRNTTFKLADVEALTRQTFAEVSVDDWRSICDHVDKIEDKYIKDHNLFDETLDSLKFTIHTCHVCDKQFSRPNHLKRHLTSHSEEKPFCCEICTKSFVRKDHLLQHQKLHEQQEDIPCDVCGKCFNRADHLAKHKASRHGIGDKVTVMGEKKYNCEICMKGFTTEKYRDVHMKAHKGDKQYSCRVCEKSFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTVCGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKAHIRRHTGERFQCDLCTESFLMGYLLTQHKRAVHGHGLTAITAGNGRGRPHTIQWAFRVKTQRIGPSDRCLQATPNMSTHSQSIVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -