Agra075242.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- JASJMR010000025.1:278348-290667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.9e-05 0.015 17.9 0.1 1 23 215 237 215 237 0.99 2 12 0.00012 0.031 16.9 1.0 1 23 243 265 243 265 0.98 3 12 4.4e-05 0.012 18.3 3.5 1 23 271 293 271 293 0.98 4 12 0.00064 0.17 14.6 4.0 3 23 307 327 305 327 0.95 5 12 0.00025 0.066 15.9 0.4 2 23 334 355 333 355 0.97 6 12 4e-07 0.00011 24.7 5.2 1 23 361 383 361 383 0.98 7 12 2.6e-06 0.00067 22.2 1.1 1 23 389 411 389 411 0.98 8 12 2.7e-06 0.00071 22.1 0.2 1 23 417 439 417 439 0.98 9 12 1.4e-06 0.00036 23.0 0.9 5 23 448 466 445 466 0.96 10 12 2.7e-05 0.0071 18.9 0.1 1 23 472 494 472 494 0.96 11 12 1.5e-06 0.00038 22.9 0.4 1 23 500 522 500 522 0.98 12 12 0.0002 0.054 16.2 0.4 1 23 539 562 539 562 0.94
Sequence Information
- Coding Sequence
- ATGACGCCGTATTTAACGGCCCCGTTGCAGATTAACAAGATTTGTCGGGTCTGTTTGATGTCCAAGGGGGACATGAAGCCCCTTTACGGGGCCTGTCTCGACGAAATGCTGTCCAGTTTCTCCGGTATCCAGGTATCAGAAGGTGACGGCTATCCACACCTAATGTGCGTACAGTGTGTACTCCAGTGCAGTAGAGCCTACACCTTCAAACAACTTATCGAAAAGTCTGATAAGATCCTGAAGCAGTTCTTGAGTCCGGAATTTCAGCGGCAACAAGCTAAGAAAGAACTAGCGGAACACGTGAGATTTAGGTCACCATCTCCTAACGGAGATGATGATGCTTCGATAGATGATCCCGGAATTCCTTGCAAGGAAGTGGCTTATGAGACTGTCGTGAAAAGTGAGGAGCATGTTATCCATAAAACTGAGATCGGAGATGAATTTTACACCATCGTGGAAAAAATCGAAGACGTTGAAGTGATCGATCAATCAGATAATGACAATTCGGAACAACTGGCGATAGCACCAACGGAGGACGACTTACCGAATTATAATATCGACATTGCCACCCTGGATGACATAATTAAAGACAACCCTAAACAGGAACCGAAAAAGTCACTTAATAAAAAGGGAGGTAAGATGTTCAAGTGTCCCAGGTGCGACGCCCAGTTCCCACTTAAAGTGGATTTAAAGATTCATATAATGACCCATCCTTTAGAACTGAACTATACGTGCAAAGTGTGCAACAAATCGTTCGCGGAGGCGCGCATTTTAAAACGACATCGGAAAATCCATTTGGATCAGAAACCGCACCGGTGCGACCAGTGCGACATGACTTTTGCGGAAAGTTCGAATTTGAGTAAACACAAGAAGAAACACACGGGAGAACTGAGAAATATGAAGGGAAAACCACATCTTTGTTCGGTATGCGGCAGAGCATTCAAATGGTCTTCGAGTCTACACAAACACATGAAATACCACACTGGACTGAAGCTGTTGAGTTGCAGTTTTTGTCCGAAACAGTACGTGGAGAGTAGAAGTTTGCAAATTCACATACGGTCCCATACTGGGGAACGTCCGTATTCTTGTCACATTTGCAGTAAAACGTTCACGCAACAGTGCAATTTGGCCAAACATATTAGGGTGCACACCAAAGAGAAGCCTTACCATTGTCCCGTCTGTAATAAAGGGTTCAGCCAGTCAGGTTACATTTCTGTACATATGCGTACGCATACAGGGGACCGTCCTTACGTCTGTTTGGTGTGTGGAAAGTCGTTTTCCGGTTCAAGTACCTTGGCATTGCACTCGAGAACTCATACGGGGGAGAGGCCTTATAAGTGCGAGTGCGGCAAGTCCTTTACTAGACAGGAAAGTCTCACGATACATATAAGGACTCATACTGGAGACAGACCGTACTTATGCAAAATCTGCGATATGGGATTTGCCTCCTCCGGACAACTGTCGGCCCACCTAAAAGTCCATACGGGAGAGAAACCTTACGCCTGCGAAATATGCGGCAAAAAGTTCGGTTTCAGTAACAGCCTAAAAGTTCACATAAGGAGCCACATAGTGAACGACCCCTCTAAAAACGAAGAGGAGGTGCAAACGGTGCAGTATACGTGCAAATTGTGCAATAAAAATTTCGAGGACGACAGCGCGTTTAATTCGCATATTTTAGACGTGCACGCCATTCAAGGCGCCACCATCGAGTTGAAAGACGAAGATTTGGAACATATTGAGACCATGCAGGTGACGGAGATTATGTAA
- Protein Sequence
- MTPYLTAPLQINKICRVCLMSKGDMKPLYGACLDEMLSSFSGIQVSEGDGYPHLMCVQCVLQCSRAYTFKQLIEKSDKILKQFLSPEFQRQQAKKELAEHVRFRSPSPNGDDDASIDDPGIPCKEVAYETVVKSEEHVIHKTEIGDEFYTIVEKIEDVEVIDQSDNDNSEQLAIAPTEDDLPNYNIDIATLDDIIKDNPKQEPKKSLNKKGGKMFKCPRCDAQFPLKVDLKIHIMTHPLELNYTCKVCNKSFAEARILKRHRKIHLDQKPHRCDQCDMTFAESSNLSKHKKKHTGELRNMKGKPHLCSVCGRAFKWSSSLHKHMKYHTGLKLLSCSFCPKQYVESRSLQIHIRSHTGERPYSCHICSKTFTQQCNLAKHIRVHTKEKPYHCPVCNKGFSQSGYISVHMRTHTGDRPYVCLVCGKSFSGSSTLALHSRTHTGERPYKCECGKSFTRQESLTIHIRTHTGDRPYLCKICDMGFASSGQLSAHLKVHTGEKPYACEICGKKFGFSNSLKVHIRSHIVNDPSKNEEEVQTVQYTCKLCNKNFEDDSAFNSHILDVHAIQGATIELKDEDLEHIETMQVTEIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -