Basic Information

Insect: Anthonomus grandis
Gene Symbol: -
Assembly: GCA_030068095.1
Location: CM057955.1:9330649-9332353[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-05 0.0066 19.0 3.7 2 23 3 24 2 24 0.97

2 15 3.8e-05 0.01 18.5 3.9 1 23 30 53 30 53 0.96

3 15 6.7e-06 0.0017 20.8 3.2 1 23 59 81 59 81 0.98

4 15 0.0018 0.47 13.2 0.1 2 23 88 109 87 109 0.96

5 15 1.7e-05 0.0045 19.6 0.2 1 23 114 136 114 136 0.98

6 15 0.0033 0.85 12.4 1.0 2 23 147 166 147 166 0.91

7 15 2.3e-07 6e-05 25.4 0.5 1 23 172 194 172 194 0.98

8 15 6.5e-05 0.017 17.7 1.4 1 23 200 222 200 222 0.99

9 15 1.1e-07 2.8e-05 26.5 0.2 1 23 228 250 228 250 0.99

10 15 0.00011 0.029 17.0 3.7 3 21 285 303 285 306 0.90

11 15 0.00059 0.15 14.7 2.6 1 23 313 336 313 336 0.97

12 15 1.1e-05 0.0028 20.2 0.8 1 23 344 366 344 366 0.98

13 15 2.1e-05 0.0056 19.3 0.5 2 23 373 394 372 394 0.95

14 15 0.056 15 8.5 3.0 1 23 400 423 400 423 0.97

15 15 0.05 13 8.6 0.4 3 23 440 461 438 462 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-05	0.0066	19.0	3.7	2	23	3	24	2	24	0.97
2	15	3.8e-05	0.01	18.5	3.9	1	23	30	53	30	53	0.96
3	15	6.7e-06	0.0017	20.8	3.2	1	23	59	81	59	81	0.98
4	15	0.0018	0.47	13.2	0.1	2	23	88	109	87	109	0.96
5	15	1.7e-05	0.0045	19.6	0.2	1	23	114	136	114	136	0.98
6	15	0.0033	0.85	12.4	1.0	2	23	147	166	147	166	0.91
7	15	2.3e-07	6e-05	25.4	0.5	1	23	172	194	172	194	0.98
8	15	6.5e-05	0.017	17.7	1.4	1	23	200	222	200	222	0.99
9	15	1.1e-07	2.8e-05	26.5	0.2	1	23	228	250	228	250	0.99
10	15	0.00011	0.029	17.0	3.7	3	21	285	303	285	306	0.90
11	15	0.00059	0.15	14.7	2.6	1	23	313	336	313	336	0.97
12	15	1.1e-05	0.0028	20.2	0.8	1	23	344	366	344	366	0.98
13	15	2.1e-05	0.0056	19.3	0.5	2	23	373	394	372	394	0.95
14	15	0.056	15	8.5	3.0	1	23	400	423	400	423	0.97
15	15	0.05	13	8.6	0.4	3	23	440	461	438	462	0.94

Sequence Information

Coding Sequence: ATGATCCAATGCCCTCACTGCCCGAAGCAGTTCACTCACAGGTTCAAACTGAAAGTTCACCTCTCGGTTCACCTGCCGGAAAAACCGTTTTCCTGCCACTCCTGCTCCACCACATTTAAATCGACCTCCACCTTAAGGAGGCACATCAGAGACATCCACGACCAAACCAAAACCTTCACCTGCACCATTTGCAATAAGAGTTTTAACAGCAAAACGAACTTTAGCATCCACGAGAAACGCCACCTGGCGGAGTTCGTGGTGCGTTGCGAGGAGTGCAGTGAGGGATTTGTGACCATGGCGGAGTACAGACGTCATCTGGTCAAGCATAGCGACAAGAAGTACTCGTGTGAGGAATGTGGTAGAGTGAGTACCAGCGAACGGGCCTTGAAGGAGCATCAAAAAATCCACCTGGAGAATTACGAGGATCGGTTCTTCCGAGAGTGTCCGATTTGTAACAAGAAGTTTAGGCAGCTGAAGAGGCATTTGAGGGAGGTCCACGAGGGCAGTCACAACTACATTTGTCCCACCTGCGGTAAAACTTTCCGCAGAGAGAACAGCTTCAAGGTCCACATGATTATCCACTCCGGAGTGAGACCTTACAGGTGCGAGGTGTGCCAGAAGGAGTTTTACAATAAACAGTACATGATCGTGCATAAACGCGTGCATACAGGTGAAAAACCTTATGAATGTGAGGTGTGCGGGAGGCGTTTTACTCAGAAACCTCCGCTTAATGTACACATGCGCACTCACTCCGGCGAAAAACCTTACGAATGCGACGTTTGTGTGGAAAAATCCCCAGTGCCAAAGCCGCCTCCCAAAAAGAAGGTCCTTACGGTGGAACCTTACCACTGGTGCCACCTGTGCGGTAAAACCTTCAAAACAAATCGGGAACTGAACAAGCACTTTGCGTTCTCGCACTTCGGTGATCAGCAGACGTTCAAGTGCAATCGATGCGGGAATTTTTACAAAAGCGAGAGCGTGCTTAAGAACCATCAGAGGTTGAAGCATGGCGTCGCCGCCTTTGATCTGTTCCAATGCGATCAGTGCGGTAAAACGTTCGTTTACAGTGCGGTCTTCAACAAGCACCTGAAGGCCCATCAGGAGTTTAAAGAGTGGCAGTGCAACGTTTGCGAGAAGATGTTCAAGAGCAGGAACTCGCTGGCGAAGCACGTGGAGAACCACTGGAACCATACGACGTACGAGTGCGAGGAGTGCGACGTTAGGTTTTTGAGCAAGAAGGTGTACAACCACCATCGAAATACTAAACATGTCAGAAAAAAAGTTGGCGAAGAGGAGGAGGTGAAACTCACCACGATCTGTTTGATATGCGACAGGGATTTTGATGAGGAGGAAAAGTTGCTTGAGCATTTCCAAACGGTGCATCATGACCCAGTCTCTTAG
Protein Sequence: MIQCPHCPKQFTHRFKLKVHLSVHLPEKPFSCHSCSTTFKSTSTLRRHIRDIHDQTKTFTCTICNKSFNSKTNFSIHEKRHLAEFVVRCEECSEGFVTMAEYRRHLVKHSDKKYSCEECGRVSTSERALKEHQKIHLENYEDRFFRECPICNKKFRQLKRHLREVHEGSHNYICPTCGKTFRRENSFKVHMIIHSGVRPYRCEVCQKEFYNKQYMIVHKRVHTGEKPYECEVCGRRFTQKPPLNVHMRTHSGEKPYECDVCVEKSPVPKPPPKKKVLTVEPYHWCHLCGKTFKTNRELNKHFAFSHFGDQQTFKCNRCGNFYKSESVLKNHQRLKHGVAAFDLFQCDQCGKTFVYSAVFNKHLKAHQEFKEWQCNVCEKMFKSRNSLAKHVENHWNHTTYECEECDVRFLSKKVYNHHRNTKHVRKKVGEEEEVKLTTICLICDRDFDEEEKLLEHFQTVHHDPVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -