Agra071706.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anthonomus grandis
Gene Symbol
-
Assembly
GCA_030068095.1
Location
CM057955.1:9373305-9380684[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 54 0.0018 0.48 13.2 4.1 1 23 31 54 31 54 0.96
2 54 0.0011 0.28 13.9 0.3 2 23 64 86 63 86 0.95
3 54 0.0062 1.6 11.5 0.5 1 23 93 116 93 116 0.95
4 54 0.00019 0.049 16.3 2.2 3 23 124 145 122 145 0.96
5 54 0.00014 0.038 16.6 0.4 1 23 153 178 153 178 0.95
6 54 3.4e-05 0.009 18.6 4.0 2 23 186 207 185 207 0.97
7 54 1.1e-05 0.0028 20.2 1.8 1 23 214 236 214 236 0.97
8 54 5.8e-06 0.0015 21.0 0.9 1 23 242 264 242 264 0.96
9 54 1.4e-05 0.0036 19.8 4.0 1 23 270 292 270 293 0.96
10 54 0.67 1.7e+02 5.1 0.1 2 21 307 326 306 327 0.92
11 54 3.7e-06 0.00097 21.6 1.3 2 23 337 359 336 359 0.97
12 54 0.086 23 7.9 4.1 1 23 395 418 395 418 0.97
13 54 5.1e-05 0.013 18.1 1.6 3 23 426 447 425 447 0.97
14 54 0.00017 0.044 16.4 0.4 1 23 455 480 455 480 0.94
15 54 0.00025 0.067 15.9 2.7 1 23 487 509 487 509 0.97
16 54 0.0004 0.11 15.2 1.2 1 23 516 538 516 538 0.95
17 54 6.1e-06 0.0016 21.0 1.0 1 23 544 566 544 566 0.98
18 54 0.0013 0.34 13.7 2.8 1 23 572 595 572 595 0.96
19 54 0.81 2.1e+02 4.8 0.4 1 20 601 620 601 622 0.94
20 54 8.9 2.3e+03 1.6 1.4 3 23 632 651 629 651 0.86
21 54 3.3e-05 0.0086 18.7 1.0 1 23 660 683 660 683 0.96
22 54 0.0013 0.34 13.7 0.8 1 23 690 713 690 713 0.95
23 54 0.042 11 8.9 2.3 2 23 720 742 719 742 0.96
24 54 0.0027 0.7 12.7 0.4 1 23 749 774 749 774 0.95
25 54 0.39 1e+02 5.8 5.1 1 23 781 803 781 803 0.96
26 54 0.0003 0.078 15.7 3.6 1 23 809 831 809 831 0.98
27 54 0.00073 0.19 14.4 1.0 1 23 837 859 837 859 0.98
28 54 4.7e-05 0.012 18.2 0.2 1 22 865 886 865 886 0.95
29 54 0.008 2.1 11.2 0.2 1 19 902 920 902 921 0.97
30 54 0.1 27 7.7 1.1 1 23 929 952 929 952 0.97
31 54 0.0092 2.4 11.0 0.2 1 23 958 981 958 981 0.93
32 54 0.0045 1.2 11.9 1.5 1 23 996 1018 996 1018 0.97
33 54 0.071 19 8.2 5.1 1 23 1025 1048 1025 1048 0.97
34 54 0.0094 2.5 10.9 0.6 1 22 1066 1087 1066 1087 0.95
35 54 1.5e-05 0.004 19.7 3.2 1 23 1110 1133 1110 1133 0.95
36 54 0.1 26 7.7 0.4 1 23 1142 1165 1142 1165 0.90
37 54 0.026 6.7 9.6 1.7 1 23 1171 1194 1171 1195 0.96
38 54 0.01 2.7 10.8 3.7 3 23 1204 1226 1202 1226 0.92
39 54 6.3e-05 0.016 17.8 3.1 1 23 1233 1255 1233 1255 0.98
40 54 0.00023 0.06 16.0 0.2 1 23 1262 1284 1262 1284 0.99
41 54 0.00024 0.063 15.9 0.6 1 23 1290 1312 1290 1312 0.96
42 54 4.2e-05 0.011 18.3 2.6 1 23 1327 1350 1327 1350 0.92
43 54 0.00019 0.051 16.2 2.0 2 23 1357 1379 1354 1379 0.89
44 54 0.00081 0.21 14.3 8.4 1 23 1385 1407 1385 1407 0.98
45 54 0.0039 1 12.1 0.4 1 19 1415 1433 1415 1434 0.97
46 54 1.9 5.1e+02 3.6 0.3 2 23 1445 1466 1444 1466 0.94
47 54 8.9e-07 0.00023 23.6 1.7 1 23 1471 1493 1471 1493 0.99
48 54 0.082 21 8.0 0.5 1 23 1499 1522 1499 1522 0.92
49 54 0.14 38 7.2 1.1 1 23 1528 1551 1528 1551 0.90
50 54 0.0032 0.83 12.4 0.3 2 23 1562 1585 1561 1585 0.89
51 54 0.00038 0.1 15.3 5.1 1 23 1592 1614 1592 1615 0.96
52 54 0.002 0.53 13.0 1.4 1 23 1623 1645 1623 1645 0.98
53 54 0.003 0.78 12.5 5.2 1 23 1651 1673 1651 1673 0.94
54 54 0.0011 0.29 13.8 3.3 1 23 1679 1702 1679 1702 0.95

Sequence Information

Coding Sequence
atgaaacaaaatagCAAttcctCGACAAAACCAAGAGCTCAAACGAGGCGCACCAAACGCTCCACATACATAAAGAAATCCGGAGACTCGTTCGAATGTCCGGAATGTCACAAACTGTTCTCCCAACGGAGATACGTGCAGCACCACCTGAACTACGTGCATAAACACAAACCGTTACCCGAAAAGGTCACGTGCACCACCTGCCTCAAATCCTTTACCAGGATAGCCACCCTAAAAGCGCACGTGCTCAGGGCGCACCTAAACAACGCCCCCAAGTTCCAATGCGACATCTGCGGCAGCCAGTTCGCGCAAAAGCATGGCATGCTCGCTCACAAGAAAGCCATCCATTTTCGCATTTTCAACGTGCATTGCGAACTATGCGGCAAAGGCTGCAAAAACCCCAGCGAACTCACCATTCACAAGAGAAAAGCCCACCAGGAAGGCGAAATGGTGCTGTTTCCGTGTCCAGAACAGGACTGCACGAAAGTGTTCAGGTCTAATCATGCGCTGCAGTACCACCTGAACGCCGCTCATGTCAAAGACAAACGATTGCTCAGCTGCACAGAGTGCTCGCGCACCTTCACCCACccttttttgctgaaaaaacaTTTGAGGAAACATGTGGTGGGACGGTTGCTGCACAGCTGCGTGATCTGCGATAAGGTGGTCACGAGCAAGACAAGCTTGCGGAACCACATGCGTTCCCACACCGGGGAGAAACCGTTTGTTTGTGAGCATTGCGGCAAGGGTTTCAGCACCAAGAACTACCTTAAGGTTCACGTGGTGGTGCACACTAAGGAGCGACCTTATAGTTGTAAGGACTGCTCGAAGAGTTTTACGCAGAGGGGCACCTTGACCGTACACAGGCTTAAACACCATCCGGAACTTAAGGCGGCTAAGGACGGCAGTGCCACCTGGCGGTGCGACACTTGCCTAAAACTCTTCGGTTCCTCCAACTTGCTGACGGTGCACAAACAGATCTGCCGCAAGTACAAACGTATCCCGAACAAATGCCGGGAGTGCGGTAAAACGTTCCCTAGGGAAAAGCAACTGAGACGCCACCTGAACTCGGTGCACAAAAACAAGAAAACGGTACCGTGTCCGGAGTGTCCGAAACTGTGGAGCTGCGACTTCGATCTGAAGCAGCATATCCAAAGGGTCCATCTGCCTCCCAAGGTGGTGTTCCAATGCGACGCCTGTGGCGAAAAGTATAAGAACAAACACTCGCTGGTCTGCCATCAGAAGAGCGTTCACCTTAAAGAGTTCACCGCCTGTTGTGACGTGTGCGGCAAAGGATTCGTTAACGTATCGCAGTTGAAAACTCACCGGAAAACTGTACACGAGAGCCCGGATATCCGGATGTACTTGTGCCCAGTGGAGGGGTGCGGCaagacatttaaacaaaaatactcCGTGAGGTACCACAGGGAAACGGTCCACGCGGACCCGAAGCAAACCTTCAGGTGTGAACAGTGTGGGAAAACGTTGAGCCATCCGGACATGTACAGGAGACACGTGTACAAACACTCCAGGAGGCACCTCACTTACTCGTGCATCGTGTGCCATAAGACACTCACGAGTAACGAGAGCCTCACGGTGCACATGCGTATTCACACCGGCGACAAGCCGTTTGTCTGCGAGTACTGCGGCAAAAGCTTCAGCGCCAAGAAGTTCTTGGTTACGCATGTGCGCACTCATACCAAAGAGAGACCTTTTGCCTGTCGGTTCTGCCAGAAGAGGTTCACTCAGAGAGGTACCTTGTCGCTACATCTTAAGAAGAACCACGCGGACGATCCCCAATACGAATGCCAACTCTGCCGCCGCCTACTCAGATCCAACTTCGCACTACTAAGGCACAAACTCTCCTGTGACCCGAGCGTCACCTACAGCTGCTGTCCGGTCTGCAGCAAGTTCGTCAGAAAAGAGAAATATGACAAGCACGTCGCGTGGCACAAGATCAAACGAAAAACGCGGAACTACTCTTGCAACTTGTGCGATAAAACGTTCAAAAGTTTGCAGTACCTGAAGGTCCACGTGGAGAAGGTACACGAGAAGAAAGGGGTGCGGTACCCGTGCGACGTGTGCGGAAAGAATTTCTCCACGAAGTATCGGGCGGAGTATCACAAGAAGTCGATACATTTAAAGGATTTCGATTTGCATTGCGAGCAGTGCGGTAGAGGGTTCTTGCACTTGACGGAGCTCACTACGCACGTAAGAAAAGTCCATGACAAAGAAGTCAACGTCTTCAGTTGCTCAGTGGGCAGCTGCAGTCGGAGGTTCAGATCGAATGCTGCTCTGCAGTACCACCTCCAGACCGGCCATTCAGAGAAGAAAAACGAACACATGTGCCTGCAGTGTAACAAGGTGTTCCTCCATGTTTCTTTGTATAAGAGGCACCTGAGTAGACATACTGATCAAAGGAGGTTCACCTGTAGCACTTGTGGTAACCGATACACCTCCAAGCACAGCTTGGAGACCCACGTTAGATCCCACACTGGAGAGAGACCCTTTGTGTGTGAACATTGTGGAAACTCTTTCACAGCCAGGAAATTCCTGAAGGTGCATTTGATCGTCCATACGAAAGAGAGACCGTATGCTTGTCAGCAATGTGATAAGGGGTTCACTCAAAAAGGGAGTCTTAATATACATGTTAGGAAGTTTACAAACCTTGACTGTAGCGATCATGAAGAAGAAGAGCAAGTGTACACCTGCAGCGTTTGCGATAAACCTTTCCAAACCCTGGAAGATATCCGGAGGCACAACGTTGACTATACCAAAAATCATTATACGTGCAAGACATGTGGTGCCAATCAAGCCAGCCGCCAAAAGCTCAAGTACCACATGAACAAAGCTCACATAAAGAAGTTTAAGTTTCACTGTAACGTTTGTGGTAAAGGACTCGAAGATCCGGAAGCTCTGAACGAGCATTTCAAGGATCAGCATCTACTGAAAAGAAAACATGTAACCGTGGACTCTAAAAAAGGCTTTCAGTGCAAATTGTGTGGGAAAGCGTTCGGGCACGCGTTCATCTTGACGATGCACTTGAAGCAACACGAGATTGAATCGAGGATATTCGATTGTCGGTGGTGCCACAGGAAGTTCTTGTCCAAAAGGCAGCTGAATGATCATCAGAAGACTTTCCATCTGGACAAGTACAAGGAACTCCGATACTTACCACATTTTCCAGTGCTAAACTTCCAATGTGCTAATTGCAAAAACAACTTCAAAACGCCcctcttattaaaaaaacacttgtTAACTTGCTCCCAGTACTTCCACTCGGGTCAGTTCAGGACACAGTCGCGCCCCCGAGCGCCTCAACCCCAATACAAATGCCCGCTATGCTCGAAAGTCTTCCGAAGAAGACACGAATTCCAGAAGCACCAGGTGATCAACCACACCGATAAGGCGCTGAGACGCCACTACACCTGCGATATTTGCAATAAACCGTTTTTGGCACGGTACCTGGTGGAGAACCACAAGAAACGCGCCCATTACAAGGCGTTCAAGTTTAACTGTGAGGTATGCGGCAAAGGTCACATTAACGTTAGCGAACTGAACCGTCACGTGAAGTCCACGCACCATAAGGAAGACGTGCCGTTGATCGCTTGCACCCATTCGGGCTGCTCCAAAGTTTTTAGGACTCAGACTTCTTTGAAGTACCACCTGCACAACCACGAGGAGAACAAACCCACTTTTGTGTGTGACAAGTGCGGGCTGACCTTTGATCATCCCTTTCTCTACAAAAAGCATTTGAGGAAACACGGGGCGGAGCCCAAGGTGTACACGTGTCAGGTCTGCGATAAGACCATCAGTACTTTGGGTAGCTATGAGGACCATTTGAGAGTCCATAGCGGCGAAAGACCGTACATATGTGAGCATTGTGGGAAAGGGTTCAGGACTAAGGCCATCTTGAGGACGCACCTCGTGGTACACACGAAGGAGAAGAGGCACGTTTGTAAAATCCTGGCAAGCCGGTTTATATGCCATTACTGTAGCAGGAGCTTTAACAGAAAGAGGAACCTCCTGGCACACATCGTGAACAGACACACCAAACAGTACAGGTGCAAATGCGACACCTGCGGCCGGGGGTTCTACAGTAACACCACCCTCAAGAGGCACGTGGAGGTGGTGCACGACAAAACTCAGCAATTCAGTTGcaaaatttgtcataaaacTTTCAAGTTGCGCACTTACTTGACCACGCATATGCACCGGCACGATCCGGAGAGAATCCAGACTTTCCAGTGTTCTAACTGCGCGAAAACTTACGCGACCAAGGAGACCTTGCTCAGGCACGAACCCAGATGTCTAGGACTAACTGAGCAAGTGAAATGCGAGCGTTGCAATAAGATGATCGACAGTTCTCAGATCAAGGAGCACAATCGGGTGGCGCACGCGGAACGCAAATACAAATGCGACATCTGTAACAAAACATTCAAAGAAAACTGGTACTTGAACAAGCACATCAAGATGCACAAGGGGGAGCTCAAGTACCCGTGCGACATTTGCGGCAAACTGTGCGCCACCAAGTTCTCCGCGGAGCTCCACAAGAAGGCGGTGCACACCAACGAAAAGACTTTTTTCTGCGACCAGTGCGGCAAAGGCTTCGTCAGCGTGAACGGCTTGAATTTCCACAAGAAAAAGAGCCATCGGCCCGACGACGAGCCTTTGGAACTCATCCCTTGCCCCATAGAGGGTTGCACCAAGACCTACCGGTCGTCCGCCTCCCTAAAACACCATCTCCCCACTCACTTGGAAGAGAAACCGGTTTATCCTTGCCCCCACTGCGACAAGGTGCTTCAGCACCCCATGGGGCTGAAGCACCACATCAAAACCCATCACGGCGAGGGCCCCAGGAGGATGCACACATGCCACATCTGCGGCAAGCAACTGGTGGCCGCCACGAGCCTTAAGGATCATCTGAAGATTCACACGGGGGAGAAACCGTTCCAGTGCGAGTACTGCAGCAGGTGCTTCACCAAGAGGCATCTGCTGACGATCCACAGTGTGGTTCACACGAAGGAACGGCCCTACGTTTGTAAAGTTTGTCATAAGGGGTTTACGCAGCATGGATCTTTGAAGGGACACTTCCTAAAGGCCCATCCAGATGATAAGTGGGAGGGGGTGGGAAATAAAGTTAAGAAGAGTGTCACGTAG
Protein Sequence
MKQNSNSSTKPRAQTRRTKRSTYIKKSGDSFECPECHKLFSQRRYVQHHLNYVHKHKPLPEKVTCTTCLKSFTRIATLKAHVLRAHLNNAPKFQCDICGSQFAQKHGMLAHKKAIHFRIFNVHCELCGKGCKNPSELTIHKRKAHQEGEMVLFPCPEQDCTKVFRSNHALQYHLNAAHVKDKRLLSCTECSRTFTHPFLLKKHLRKHVVGRLLHSCVICDKVVTSKTSLRNHMRSHTGEKPFVCEHCGKGFSTKNYLKVHVVVHTKERPYSCKDCSKSFTQRGTLTVHRLKHHPELKAAKDGSATWRCDTCLKLFGSSNLLTVHKQICRKYKRIPNKCRECGKTFPREKQLRRHLNSVHKNKKTVPCPECPKLWSCDFDLKQHIQRVHLPPKVVFQCDACGEKYKNKHSLVCHQKSVHLKEFTACCDVCGKGFVNVSQLKTHRKTVHESPDIRMYLCPVEGCGKTFKQKYSVRYHRETVHADPKQTFRCEQCGKTLSHPDMYRRHVYKHSRRHLTYSCIVCHKTLTSNESLTVHMRIHTGDKPFVCEYCGKSFSAKKFLVTHVRTHTKERPFACRFCQKRFTQRGTLSLHLKKNHADDPQYECQLCRRLLRSNFALLRHKLSCDPSVTYSCCPVCSKFVRKEKYDKHVAWHKIKRKTRNYSCNLCDKTFKSLQYLKVHVEKVHEKKGVRYPCDVCGKNFSTKYRAEYHKKSIHLKDFDLHCEQCGRGFLHLTELTTHVRKVHDKEVNVFSCSVGSCSRRFRSNAALQYHLQTGHSEKKNEHMCLQCNKVFLHVSLYKRHLSRHTDQRRFTCSTCGNRYTSKHSLETHVRSHTGERPFVCEHCGNSFTARKFLKVHLIVHTKERPYACQQCDKGFTQKGSLNIHVRKFTNLDCSDHEEEEQVYTCSVCDKPFQTLEDIRRHNVDYTKNHYTCKTCGANQASRQKLKYHMNKAHIKKFKFHCNVCGKGLEDPEALNEHFKDQHLLKRKHVTVDSKKGFQCKLCGKAFGHAFILTMHLKQHEIESRIFDCRWCHRKFLSKRQLNDHQKTFHLDKYKELRYLPHFPVLNFQCANCKNNFKTPLLLKKHLLTCSQYFHSGQFRTQSRPRAPQPQYKCPLCSKVFRRRHEFQKHQVINHTDKALRRHYTCDICNKPFLARYLVENHKKRAHYKAFKFNCEVCGKGHINVSELNRHVKSTHHKEDVPLIACTHSGCSKVFRTQTSLKYHLHNHEENKPTFVCDKCGLTFDHPFLYKKHLRKHGAEPKVYTCQVCDKTISTLGSYEDHLRVHSGERPYICEHCGKGFRTKAILRTHLVVHTKEKRHVCKILASRFICHYCSRSFNRKRNLLAHIVNRHTKQYRCKCDTCGRGFYSNTTLKRHVEVVHDKTQQFSCKICHKTFKLRTYLTTHMHRHDPERIQTFQCSNCAKTYATKETLLRHEPRCLGLTEQVKCERCNKMIDSSQIKEHNRVAHAERKYKCDICNKTFKENWYLNKHIKMHKGELKYPCDICGKLCATKFSAELHKKAVHTNEKTFFCDQCGKGFVSVNGLNFHKKKSHRPDDEPLELIPCPIEGCTKTYRSSASLKHHLPTHLEEKPVYPCPHCDKVLQHPMGLKHHIKTHHGEGPRRMHTCHICGKQLVAATSLKDHLKIHTGEKPFQCEYCSRCFTKRHLLTIHSVVHTKERPYVCKVCHKGFTQHGSLKGHFLKAHPDDKWEGVGNKVKKSVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-