Agra069416.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057954.1:10872223-10872780[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-05 0.0045 18.9 0.0 9 38 5 35 1 42 0.83 2 2 5.1 3.8e+02 3.1 0.0 24 38 161 175 161 179 0.79
Sequence Information
- Coding Sequence
- ATGTTAAAAGTCATAGAAGCGGTCAATAATGTTGAAATGGGCTGGTTAAAAGCATCTAAGACTTACGGGGTACCACAAGCAACCCTACGAAGACAtgctttaaaaacaaagaaaacaataaagACGGAGGAAAAACGCCTCGGTAGATTTAAGCCTACTTTTCCACCAGAAGTAGAACGGCAGTTAGTTGAACATCTAAAACTTCTAGAGTCAAGATTTTTTGGACTCACAAGGAAGGATGTGTTAAGCTTGGCCTACCagttagcttttaaaaatggcTTTCAACACAACTTTAACCGTGAGAAGAAAACAGCAGGAAAAGATTGGCTGCGAGAATTCCGAAGAAGAAATCCGGATATAGCATTACGTAAGCCAGAGGCGACATCTGCTGCTAGAGCCCAGGCTTTCAACAAACCACAAGTTGCTCGTTTTTTTGAGATTCTAGAAAAAgtgattaaaaaagaaaatatcaacgTACTTAACATATATAACGTCGATGAATCAACTCTCTACAAAagcctcaaaaaatatttgcaacaaCAGTTCGTAAGCAAATAG
- Protein Sequence
- MLKVIEAVNNVEMGWLKASKTYGVPQATLRRHALKTKKTIKTEEKRLGRFKPTFPPEVERQLVEHLKLLESRFFGLTRKDVLSLAYQLAFKNGFQHNFNREKKTAGKDWLREFRRRNPDIALRKPEATSAARAQAFNKPQVARFFEILEKVIKKENINVLNIYNVDESTLYKSLKKYLQQQFVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116366; iTF_00115710;
- 90% Identity
- iTF_00115710;
- 80% Identity
- -