Agra073166.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057956.1:8559324-8561072[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-06 8.6e-05 24.4 0.0 1 36 13 48 13 53 0.93
Sequence Information
- Coding Sequence
- ATGGCTGCTCCCTTCAAGCAAAAGCGAAAACAATGGAGTGAGGAAGATATGGAAAACGCCATTGAATCAGTAAGAAACAGAAATATGGGTTATTTGGCGGCAgcaaaaagatttaaagttccACGCTCAACACTTTTTCGCTTCTGTCATACTGAAGGGCCTCCAGCAATTGTGAGTAAAACGAAGTTGGGTAAACGACCAGTTTTGTCAGAGGAGTTGGAAAAGGAACTAGTTCAATATTTACTTATAATGGATCAGAAGTTTTTTGGTCTGACAAGAAGGGATGTCCGATCTCTAGCATTCCAACTTGCTACACGTAACAATATACCAAATCCATTCTCTCTTTTACGTGAATCTGCGGGAAAAGATTGGTTTTCATCATTCATGCACAGGCATAAGGCTACACTAAGTTTACGAAAGCCCACTGGAACTTCCCTAGCAAGAGCCGTTGGTTTTAATAGGGAAAATGTCAATGAGTTTTTCGACTTATTAAAGAGGACTATGGCGGAGCGAAATTATGGACCTCATCAAATATATAATGTAGATGAGTCGGGGTTGTCCATTGTGCAATCAAGATGTCCAGAAGTGGTATCGCTTAGAGGCAAACGACAAGTTGGTACTCTCACATCAGCCGAAAGAGGTTCACTTATAACCATCGTAATGTGTATGAGTGCGGCAGGTAATTTTGTGCCACCGATGATCATCTTTCCACGCAAAAAAGCCAGTGAGCAGTTGAAAAAGGGGGCACCTTTAGAATCGCTGTTTGCTTTTCACCCATCCGGGTGGATTCAAAcagatttatttacaaaatggtTTGACCACTTCCTAGAGCTAGCCAAACCTTCAGCAACAAAACCAATACTGTTGATATTAGACGGCCATCACACTCACACTAGAAATCTAGATGTACTTATCAAagctaaagaaaataatgttacTATTTTATGCCTACCACCACATACAACGCACAAACTTCAGCCCCTTGATAAGACCGTCATGGGTGCATTAAAGACCTTCTATAACGAAGAAGTGAGAATCTTCATGAGAACGGAAAAACGTGCAGTAATACATTTTGATATTTGCCAGTTATTTGGTAGCGCCTATCTTAAAGTGCAATCTGGGGAAAGAGCTGTTAAAGGATTTAGTGCCACTGGGATCTACCctttaagaagaaatattttcacAGACGAAGAATTTGCGGCCGAAATGCAAaacgaaaatcaaaatttgccGAACGATAATACACGTCCTCATAATGAGCAAAATAACTTGCCTTATGTTTATCCTAGTGACATAATTCCAGTTCCAGAACTAACAAAGAAGCCGGCAACTCGGGGAAGAAAATGTGGGCGTTCCAAAATAATCACGTCGACGCCGAATAAGGAGGAATTAGAACAATCAATTAATCTCTCAAAACAAAAAGTTACACGAAACGTTTTCGATGAACCTGGATCTAGTGGATTACAAACCAAGAAGCGTAAAGTCACGAAAAAATATGTACCATCTAGTTCCTCTGATTCAGAATCTGAAGCAGTAATTGATGATTCATCTGATGATGATCTGCCATTAAGCTGCTACAATAAAAAACCAACCGGTGAAGATGTCCCATGTATTTTTTGCCTAGAAACATTTTCCTCAAGCCGAAGTAGAGAAATATGGGTGCAATGCGCAATCTGCCATGAATGGGCTCACGAAGCTTGTACCAGTGCAGAAAAAGATGTATTTGTTTGCGATTTTTGCAATTCCTAG
- Protein Sequence
- MAAPFKQKRKQWSEEDMENAIESVRNRNMGYLAAAKRFKVPRSTLFRFCHTEGPPAIVSKTKLGKRPVLSEELEKELVQYLLIMDQKFFGLTRRDVRSLAFQLATRNNIPNPFSLLRESAGKDWFSSFMHRHKATLSLRKPTGTSLARAVGFNRENVNEFFDLLKRTMAERNYGPHQIYNVDESGLSIVQSRCPEVVSLRGKRQVGTLTSAERGSLITIVMCMSAAGNFVPPMIIFPRKKASEQLKKGAPLESLFAFHPSGWIQTDLFTKWFDHFLELAKPSATKPILLILDGHHTHTRNLDVLIKAKENNVTILCLPPHTTHKLQPLDKTVMGALKTFYNEEVRIFMRTEKRAVIHFDICQLFGSAYLKVQSGERAVKGFSATGIYPLRRNIFTDEEFAAEMQNENQNLPNDNTRPHNEQNNLPYVYPSDIIPVPELTKKPATRGRKCGRSKIITSTPNKEELEQSINLSKQKVTRNVFDEPGSSGLQTKKRKVTKKYVPSSSSDSESEAVIDDSSDDDLPLSCYNKKPTGEDVPCIFCLETFSSSRSREIWVQCAICHEWAHEACTSAEKDVFVCDFCNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116530;
- 90% Identity
- iTF_00116540; iTF_00116543;
- 80% Identity
- -