Agra051360.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057947.1:23704101-23704643[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 1e-06 30.5 0.0 2 36 19 54 18 61 0.89
Sequence Information
- Coding Sequence
- atgccAAGAACTTACAAAAGACCATTGGGCAGTCGGTCGTATCGAGATTATACCGATAACACTCTTCAGAAAGCGTTAGCCGAAATTACAAACAAGACTATAAGTCAACGAGAGGCatcaaaaagttataaaatccCTAGAAGCACTCTtcagctaaatttaaaattaggtttaGCGAAAAAAAAGCATGGGGGGCAGACCGCTTTGTCTGCAGAAGAAGAGAAGGTAATAGTAGCCAATATTCTTAAGTTGTCCGAGTTTGGGTTTCCTGTTGATAAATTCGAGCTAAGAATGttagtgaaaaattatttcgatAGGAAAGGGGTGACACAttcgaaatttaaagaaaatttgccGGGTGCGGATTGGACCGAGCTATTTCTTAAAAGACACAAGGAATTGACTGTTAGGTTTGCCGCTAATATCAAAAATGTCAGAGCTGCAGTTTCTTTAGCaacacttaataattattttaatcacTTAGAAAAGGAACTTGCAGATATTCCgccacaaaatatttttaactttgacgaAAGAAAGTAA
- Protein Sequence
- MPRTYKRPLGSRSYRDYTDNTLQKALAEITNKTISQREASKSYKIPRSTLQLNLKLGLAKKKHGGQTALSAEEEKVIVANILKLSEFGFPVDKFELRMLVKNYFDRKGVTHSKFKENLPGADWTELFLKRHKELTVRFAANIKNVRAAVSLATLNNYFNHLEKELADIPPQNIFNFDERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00116060; iTF_00116023;
- 80% Identity
- -