Agra059217.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057950.1:13370131-13370550[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-09 6.1e-07 31.3 0.0 2 40 10 48 9 52 0.94
Sequence Information
- Coding Sequence
- ATGCCTCCTAAAAGGGCACCTTGGTGCGAGGAGGATTTGATATCAGCAGTTCGATCTGTTCAACGCGGTACTCTGAGTACATATGGGGCTGCAGCAAGGTTTAATATTCCCAGAAAAACCATTAGAAATCATGTTCAGAATGGAatcgtaataaaaaaactaggtcgtaaatctattttaaaagaagaacaagaagctgATCTTGTTAAACgaataataagatttagtgAAATAGGTCTACCTGTGACTCCACGGATCCTTCGTCGAATGGTATTCAGATTCtgcgaagataataaaattgctcatcaatttaatacaacttcaaaacttgctggtaaagactggctaaacgcttttatgaagagaaatcctgtaatttctaaaagaaaagcacagtttatgaatccagctagggcttaa
- Protein Sequence
- MPPKRAPWCEEDLISAVRSVQRGTLSTYGAAARFNIPRKTIRNHVQNGIVIKKLGRKSILKEEQEADLVKRIIRFSEIGLPVTPRILRRMVFRFCEDNKIAHQFNTTSKLAGKDWLNAFMKRNPVISKRKAQFMNPARA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116002; iTF_00115976; iTF_00116388; iTF_00116267; iTF_00116404; iTF_00116220; iTF_00115966; iTF_00116192;
- 90% Identity
- iTF_00115976;
- 80% Identity
- -