Agra041546.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057944.1:19625735-19626454[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-09 5.3e-07 31.5 0.0 2 36 19 54 18 61 0.89
Sequence Information
- Coding Sequence
- atgccAAGAACTTACAAAAGACCATTGGGCAGCCGGTCGTATCGAGAATATACTGATAACACTCTTCAGAAAGCGTTAGCCGAAATTACAAACAAGACTATAAGTCAACGAGAGGCATCAAAAAGGTATAAAATCCCTAGAAGCACTCTtcagctaaatttaaaattaggtttaGCGAAAAAAAAGCATGGGGGGCAGACCGCTTTGTCTGCAGAAGAAGAGAAGGTAATAGTAGCCAATATTCTTAAGTTGTCCGAGTTTGGGTTTTCTGTTGATAAATTCGAGCTAAGAATGttagtgaaaaattatttggataggAAAGGGGTGACACAttcgaaatttaaagaaaatttgccGGGTGCGGATTGGACCGAGCTATTTCTTAAAAGACACAAGGAATTGACTGTTAGGTTTGCCGCTAATATCAAAAATGTCAGAGCTGCAGTTTCTTTAGCaacacttaataattattttaatcacTTAGAAAAGGAACTTGCAGATATTCCgccacaaaatatttttaactttgacgaAAGTAACTTGGCCGATAACCCCGGGAAAAAGAAAGTTATCGCGAAGAAAGGGACAAAATACCCTGAGAGAATTATTCATTCTTCGAAAACATCCACATCAATAATGTTTTGTGGAAATGCGGCTGGGACTATTTTACCACCGTATGTGGTCTATCGTTCCACGAACCTATATGAGTCTTGGGTCTAA
- Protein Sequence
- MPRTYKRPLGSRSYREYTDNTLQKALAEITNKTISQREASKRYKIPRSTLQLNLKLGLAKKKHGGQTALSAEEEKVIVANILKLSEFGFSVDKFELRMLVKNYLDRKGVTHSKFKENLPGADWTELFLKRHKELTVRFAANIKNVRAAVSLATLNNYFNHLEKELADIPPQNIFNFDESNLADNPGKKKVIAKKGTKYPERIIHSSKTSTSIMFCGNAAGTILPPYVVYRSTNLYESWV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116109; iTF_00116466; iTF_00116023; iTF_00116060; iTF_00116061; iTF_00116148;
- 90% Identity
- iTF_00116061;
- 80% Identity
- -