Agra058692.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057950.1:8789216-8789653[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-09 1.5e-07 33.2 0.0 4 38 18 52 15 57 0.91
Sequence Information
- Coding Sequence
- atggttGGAAATTACTCAAGAAAAACCACGTGTCAGTCTTGGGATCCGTTACAGATGCAAAAAGCTATTGCGGCACTACAAAATGGAGAAATGGGCTGGCTCAAAGCTTCAAAAACATTTGGCGTACCCCAGGCTACGCTAAGAAGACGAGCATcggacaaaaataaaagagtgaAAGCTACTGATAAGGGTCTAGGGCGATACGAAACCACGTTTTCCGTAGAGTTGGAGAGGGACCTAGTTcaacatatcaaattattggaatCTTGTTTATTTGGTTTATCATGCGATGAAGTTCATCCCTTGGCGTATCAACTGACAGAAAGAAATGGAATTGCACACAGGTTCAACTCAACTACTAAAGTGGCTGGTTGGGGTTGGCTACGTGGATTTAGGTCCAGAAACCCCGATATATCTCTTAGCTACTTCGGCCGCTAG
- Protein Sequence
- MVGNYSRKTTCQSWDPLQMQKAIAALQNGEMGWLKASKTFGVPQATLRRRASDKNKRVKATDKGLGRYETTFSVELERDLVQHIKLLESCLFGLSCDEVHPLAYQLTERNGIAHRFNSTTKVAGWGWLRGFRSRNPDISLSYFGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116426;
- 90% Identity
- iTF_00116014; iTF_00115897;
- 80% Identity
- -