Agra008696.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- clz9
- Assembly
- GCA_030068095.1
- Location
- CM057937.1:6540479-6542458[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-09 2.1e-07 32.7 0.0 2 36 19 54 18 61 0.89
Sequence Information
- Coding Sequence
- atgccAAGAACTTACAAAAGACCATTGGGCAGCCGGTCGTATCGAGATTATACTGATAACACTCTTCAGAAAGCGTTAGCCGAAATTACAAACAAGACTATGAGTCAACGAGAGGCATCAAAAAGGTATAAAATCCCTAGAAGCACTCTtcagctaaatttaaaattaggtttaGCGAAAAAAAAGCATGGGGGGCAGACCGCTTTGTCTGCAGAAGAAGAGAAGGTAATAGTAGCCAATATTCTTAAGTTGTCCGAGTTTGGGTTTCCTGTTGATAAATTCGAGCTAAGAATGTTTGCCGCTAATATCAAAAATGTCAGAGCTGCAGTTTCTTTAGCaacacttaataattattttaatcacTTAGAAAAGGAACTTGCAGATATTCCgccacaaaatatttttaactttgacgaAAGTAACTTGGCCGATAACCCCGGGAAAAAGAAAGTTATCGCGAAGAAAGGGACAAAATACCCTGAGAGAATTATTCATTCTTCGAAAACATCCACATCAATAATGTTTTGTGGAAATGCGGCTGGGACTATTTTACCACCGTATGTGGTCTATCGTTCCACGAACCTATATGAGTCTTGGGTCCAAGGCGGACCACCAAATGCAAGATATAATCGAACAAAATCAGGGTGGTTCGATTCCTGCACGTTTGAAGACTGGTTCGAACATCTTTTACttccagttttaaaaaaagaagagggCCCTAAAGTTGTTATGGGTGACAACTTATCATCCCACATAAATTCCCATGTGTTGGAATTATGTGAAGAAAATAATGTTAGATTTGTTTGCCTTCCTCCCAACACAACTCACTTAACTCAGCCGTTAGATGTGGCATATTTTCGACCAATGAAGTTAGCGTGGCGAAAAATTTTggagaaatataaatataaatatggatGCGTTGTTAACAAATCCCATTTTCCAAGCCTCCTAAAACAGTTAATGGCCAATCTAAAGGAAACTGGCAAAGAGTCTTTAATATCTGGCTTTCGAAAATGCGGAATTTATCCATGTAATAGACAGCAAGTTATAGATAGACTCCCAAAAAAAGATGTGGACGCACTTAAGAACCAATCTTTGATAAGCGACTCTGTTTtagatttattggaaaaacaaaGATTTGGCAAAGGATCTGCTGAACCCAAATCAAAGAGAACGAAGATTAATATAACTCCTGGTAAAAGCCTTCTGAACGTCCCAACACCTTTGGAGGATCCCACACCGTTGGAGCATCCAACACCTTTTGAGGATCCAACACCTTTTGAGGATCCAACACTTTTGGAGGATGACGAGGAAGATGATATAAGTGATGTTTCCGAAAATAACAATATTGCCGAGCTAGAAGAAATGCCAGGAACCAGTAGGGAAGGGGCAGAAAAGTTGAAAGGTGTGAAATCTGcgaagaggcaaaaaaaaaccacaaaaaggTCTACGAATTTTAATGAAGAAAGTGATGTTTCTTCTGGAGGCTACACTTCTTTATCTGAAGCAGAAGGGGAAAATTGGGCACATCTAAGTAGTGATGATGAGGCAGTTGAAGTGGGACAGCTACCGGTTGAAAATTCATCCAATAAAATGTATCAACGTGGGGAATTTGTCATAGTAAAATatgatcaaaaatattatccaggaaaaataatttccacCAATAAAAATGAAGCACAAATTTCCACGATGATTGAGTCCGGGCCAAAAGGTTGGAAGTGGCCGAAAAACGAAGACGTTCTATGGTACCCCAACATAGAAATAATGGAGAAAATTAAAGAACCCGTTTCTACCACTTCAAGGGCAATTTTTGTGGTTCCCGAAAtgatgaaatacaaaaattttgttttcttcaaataa
- Protein Sequence
- MPRTYKRPLGSRSYRDYTDNTLQKALAEITNKTMSQREASKRYKIPRSTLQLNLKLGLAKKKHGGQTALSAEEEKVIVANILKLSEFGFPVDKFELRMFAANIKNVRAAVSLATLNNYFNHLEKELADIPPQNIFNFDESNLADNPGKKKVIAKKGTKYPERIIHSSKTSTSIMFCGNAAGTILPPYVVYRSTNLYESWVQGGPPNARYNRTKSGWFDSCTFEDWFEHLLLPVLKKEEGPKVVMGDNLSSHINSHVLELCEENNVRFVCLPPNTTHLTQPLDVAYFRPMKLAWRKILEKYKYKYGCVVNKSHFPSLLKQLMANLKETGKESLISGFRKCGIYPCNRQQVIDRLPKKDVDALKNQSLISDSVLDLLEKQRFGKGSAEPKSKRTKINITPGKSLLNVPTPLEDPTPLEHPTPFEDPTPFEDPTLLEDDEEDDISDVSENNNIAELEEMPGTSREGAEKLKGVKSAKRQKKTTKRSTNFNEESDVSSGGYTSLSEAEGENWAHLSSDDEAVEVGQLPVENSSNKMYQRGEFVIVKYDQKYYPGKIISTNKNEAQISTMIESGPKGWKWPKNEDVLWYPNIEIMEKIKEPVSTTSRAIFVVPEMMKYKNFVFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116375; iTF_00116130;
- 90% Identity
- iTF_00116130; iTF_00116375;
- 80% Identity
- -